Literature DB >> 24251072

Domesticated transposable element gene products in human cancer.

Jesse D Riordan1, Adam J Dupuy.   

Abstract

The adaptation of transposable elements inserted within the genome to serve novel functions in a host cell, a process known as molecular domestication, is a widespread phenomenon in nature. Around fifty protein-coding genes in humans have arisen through this mechanism. Functional characterization of these domesticated genes has revealed involvement in a multitude of diverse cellular processes. Some of these functions are related to cellular activities and pathways known to be involved in cancer development. In this mini-review we discuss such roles of domesticated genes that may be aberrantly regulated in human cancer, as well as studies that have identified disrupted expression in tumors. We also describe studies that have provided definitive experimental evidence for transposable element-derived gene products in promoting tumorigenesis.

Entities:  

Keywords:  LDOC1; LDOC1L; Rtl1; cancer; domesticated genes; exaptation; transposons

Year:  2013        PMID: 24251072      PMCID: PMC3827096          DOI: 10.4161/mge.26693

Source DB:  PubMed          Journal:  Mob Genet Elements        ISSN: 2159-2543


  46 in total

1.  A small family of sushi-class retrotransposon-derived genes in mammals and their relation to genomic imprinting.

Authors:  Neil A Youngson; Sylvia Kocialkowski; Nina Peel; Anne C Ferguson-Smith
Journal:  J Mol Evol       Date:  2005-09-12       Impact factor: 2.395

Review 2.  Transposable elements and the evolution of regulatory networks.

Authors:  Cédric Feschotte
Journal:  Nat Rev Genet       Date:  2008-05       Impact factor: 53.242

Review 3.  Mobile genetic elements and cancer. From mutations to gene therapy.

Authors:  I A Kozeretska; S V Demydov; L I Ostapchenko
Journal:  Exp Oncol       Date:  2011-12

4.  Multiple imprinted and stemness genes provide a link between normal and tumor progenitor cells of the developing human kidney.

Authors:  Benjamin Dekel; Sally Metsuyanim; Kai M Schmidt-Ott; Edi Fridman; Jasmin Jacob-Hirsch; Amos Simon; Jehonathan Pinthus; Yoram Mor; Jonathan Barasch; Ninette Amariglio; Yair Reisner; Naftali Kaminski; Gideon Rechavi
Journal:  Cancer Res       Date:  2006-06-15       Impact factor: 12.701

Review 5.  Inviting instability: Transposable elements, double-strand breaks, and the maintenance of genome integrity.

Authors:  D J Hedges; P L Deininger
Journal:  Mutat Res       Date:  2006-12-08       Impact factor: 2.433

6.  Thousands of human mobile element fragments undergo strong purifying selection near developmental genes.

Authors:  Craig B Lowe; Gill Bejerano; David Haussler
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-26       Impact factor: 11.205

7.  ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth.

Authors:  Ellen Markljung; Lin Jiang; Jacob D Jaffe; Tarjei S Mikkelsen; Ola Wallerman; Martin Larhammar; Xiaolan Zhang; Li Wang; Veronica Saenz-Vash; Andreas Gnirke; Anders M Lindroth; Romain Barrés; Jie Yan; Sara Strömberg; Sachinandan De; Fredrik Pontén; Eric S Lander; Steven A Carr; Juleen R Zierath; Klas Kullander; Claes Wadelius; Kerstin Lindblad-Toh; Göran Andersson; Göran Hjälm; Leif Andersson
Journal:  PLoS Biol       Date:  2009-12-15       Impact factor: 8.029

8.  ZBED evolution: repeated utilization of DNA transposons as regulators of diverse host functions.

Authors:  Alexander Hayward; Awaisa Ghazal; Göran Andersson; Leif Andersson; Patric Jern
Journal:  PLoS One       Date:  2013-03-22       Impact factor: 3.240

9.  Lentiviral vector-based insertional mutagenesis identifies genes associated with liver cancer.

Authors:  Marco Ranzani; Daniela Cesana; Cynthia C Bartholomae; Francesca Sanvito; Mauro Pala; Fabrizio Benedicenti; Pierangela Gallina; Lucia Sergi Sergi; Stefania Merella; Alessandro Bulfone; Claudio Doglioni; Christof von Kalle; Yoon Jun Kim; Manfred Schmidt; Giovanni Tonon; Luigi Naldini; Eugenio Montini
Journal:  Nat Methods       Date:  2013-01-13       Impact factor: 28.547

10.  Coordinate hypermethylation at specific genes in prostate carcinoma precedes LINE-1 hypomethylation.

Authors:  A R Florl; C Steinhoff; M Müller; H-H Seifert; C Hader; R Engers; R Ackermann; W A Schulz
Journal:  Br J Cancer       Date:  2004-08-31       Impact factor: 7.640

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  5 in total

Review 1.  p53 in the game of transposons.

Authors:  Annika Wylie; Amanda E Jones; John M Abrams
Journal:  Bioessays       Date:  2016-09-19       Impact factor: 4.345

2.  Selective expression of sense and antisense transcripts of the sushi-ichi-related retrotransposon--derived family during mouse placentogenesis.

Authors:  Christine Henke; Pamela L Strissel; Maria-Theresa Schubert; Megan Mitchell; Claus C Stolt; Florian Faschingbauer; Matthias W Beckmann; Reiner Strick
Journal:  Retrovirology       Date:  2015-02-03       Impact factor: 4.602

3.  Functional annotation of the Ophiostoma novo-ulmi genome: insights into the phytopathogenicity of the fungal agent of Dutch elm disease.

Authors:  André M Comeau; Josée Dufour; Guillaume F Bouvet; Volker Jacobi; Martha Nigg; Bernard Henrissat; Jérôme Laroche; Roger C Levesque; Louis Bernier
Journal:  Genome Biol Evol       Date:  2014-12-24       Impact factor: 3.416

4.  RTL1 promotes melanoma proliferation by regulating Wnt/β-catenin signalling.

Authors:  Guobiao Fan; Dan Ye; Songcheng Zhu; Jiajie Xi; Xudong Guo; Jing Qiao; Yukang Wu; Wenwen Jia; Guiying Wang; Guohuang Fan; Jiuhong Kang
Journal:  Oncotarget       Date:  2017-11-20

5.  Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages.

Authors:  Magali Lescot; Pascal Hingamp; Kenji K Kojima; Emilie Villar; Sarah Romac; Alaguraj Veluchamy; Martine Boccara; Olivier Jaillon; Daniele Iudicone; Chris Bowler; Patrick Wincker; Jean-Michel Claverie; Hiroyuki Ogata
Journal:  ISME J       Date:  2015-11-27       Impact factor: 10.302

  5 in total

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