Literature DB >> 24248380

Copper control of bacterial nitrous oxide emission and its impact on vitamin B12-dependent metabolism.

Matthew J Sullivan1, Andrew J Gates, Corinne Appia-Ayme, Gary Rowley, David J Richardson.   

Abstract

Global agricultural emissions of the greenhouse gas nitrous oxide (N2O) have increased by around 20% over the last 100 y, but regulation of these emissions and their impact on bacterial cellular metabolism are poorly understood. Denitrifying bacteria convert nitrate in soils to inert di-nitrogen gas (N2) via N2O and the biochemistry of this process has been studied extensively in Paracoccus denitrificans. Here we demonstrate that expression of the gene encoding the nitrous oxide reductase (NosZ), which converts N2O to N2, is regulated in response to the extracellular copper concentration. We show that elevated levels of N2O released as a consequence of decreased cellular NosZ activity lead to the bacterium switching from vitamin B12-dependent to vitamin B12-independent biosynthetic pathways, through the transcriptional modulation of genes controlled by vitamin B12 riboswitches. This inhibitory effect of N2O can be rescued by addition of exogenous vitamin B12.

Entities:  

Keywords:  NosC; NosR; denitrification; transcription

Mesh:

Substances:

Year:  2013        PMID: 24248380      PMCID: PMC3856849          DOI: 10.1073/pnas.1314529110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

1.  Genetic control by a metabolite binding mRNA.

Authors:  Ali Nahvi; Narasimhan Sudarsan; Margaret S Ebert; Xiang Zou; Kenneth L Brown; Ronald R Breaker
Journal:  Chem Biol       Date:  2002-09

2.  NosR, a membrane-bound regulatory component necessary for expression of nitrous oxide reductase in denitrifying Pseudomonas stutzeri.

Authors:  H Cuypers; A Viebrock-Sambale; W G Zumft
Journal:  J Bacteriol       Date:  1992-08       Impact factor: 3.490

Review 3.  Cell biology and molecular basis of denitrification.

Authors:  W G Zumft
Journal:  Microbiol Mol Biol Rev       Date:  1997-12       Impact factor: 11.056

4.  A riboswitch regulates expression of the coenzyme B12-independent methionine synthase in Mycobacterium tuberculosis: implications for differential methionine synthase function in strains H37Rv and CDC1551.

Authors:  Digby F Warner; Suzana Savvi; Valerie Mizrahi; Stephanie S Dawes
Journal:  J Bacteriol       Date:  2007-02-16       Impact factor: 3.490

5.  Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils.

Authors:  Robert A Sanford; Darlene D Wagner; Qingzhong Wu; Joanne C Chee-Sanford; Sara H Thomas; Claribel Cruz-García; Gina Rodríguez; Arturo Massol-Deyá; Kishore K Krishnani; Kirsti M Ritalahti; Silke Nissen; Konstantinos T Konstantinidis; Frank E Löffler
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-12       Impact factor: 11.205

Review 6.  Mitigating release of the potent greenhouse gas N(2)O from the nitrogen cycle - could enzymic regulation hold the key?

Authors:  David Richardson; Heather Felgate; Nick Watmough; Andrew Thomson; Elizabeth Baggs
Journal:  Trends Biotechnol       Date:  2009-06-03       Impact factor: 19.536

7.  Nitrous oxide (N2O): the dominant ozone-depleting substance emitted in the 21st century.

Authors:  A R Ravishankara; John S Daniel; Robert W Portmann
Journal:  Science       Date:  2009-08-27       Impact factor: 47.728

8.  A riboswitch-regulated antisense RNA in Listeria monocytogenes.

Authors:  J R Mellin; Teresa Tiensuu; Christophe Bécavin; Edith Gouin; Jörgen Johansson; Pascale Cossart
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-22       Impact factor: 11.205

9.  Nitrous oxide degradation by cobalamin-dependent methionine synthase: characterization of the reactants and products in the inactivation reaction.

Authors:  J T Drummond; R G Matthews
Journal:  Biochemistry       Date:  1994-03-29       Impact factor: 3.162

10.  Multiple posttranscriptional regulatory mechanisms partner to control ethanolamine utilization in Enterococcus faecalis.

Authors:  Kristina A Fox; Arati Ramesh; Jennifer E Stearns; Agathe Bourgogne; Angelica Reyes-Jara; Wade C Winkler; Danielle A Garsin
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-25       Impact factor: 11.205

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  25 in total

1.  Transcriptional Regulation, Metal Binding Properties and Structure of Pden1597, an Unusual Zinc Transport Protein from Paracoccus denitrificans.

Authors:  Melody Handali; Durga P Neupane; Hridindu Roychowdhury; Erik T Yukl
Journal:  J Biol Chem       Date:  2015-03-18       Impact factor: 5.157

2.  INDISIM-Denitrification, an individual-based model for study the denitrification process.

Authors:  Pablo Araujo-Granda; Anna Gras; Marta Ginovart; Vincent Moulton
Journal:  J Ind Microbiol Biotechnol       Date:  2019-11-05       Impact factor: 3.346

3.  The effect of pH on Marinobacter hydrocarbonoclasticus denitrification pathway and nitrous oxide reductase.

Authors:  Cíntia Carreira; Rute F Nunes; Olga Mestre; Isabel Moura; Sofia R Pauleta
Journal:  J Biol Inorg Chem       Date:  2020-08-26       Impact factor: 3.358

4.  AztD, a Periplasmic Zinc Metallochaperone to an ATP-binding Cassette (ABC) Transporter System in Paracoccus denitrificans.

Authors:  Melody Handali; Hridindu Roychowdhury; Durga P Neupane; Erik T Yukl
Journal:  J Biol Chem       Date:  2015-10-14       Impact factor: 5.157

5.  Variable Inhibition of Nitrous Oxide Reduction in Denitrifying Bacteria by Different Forms of Methanobactin.

Authors:  Jin Chang; Peng Peng; Alan A DiSpirito; Jeremy D Semrau
Journal:  Appl Environ Microbiol       Date:  2022-03-14       Impact factor: 5.005

6.  Methanobactin from Methylosinus trichosporium OB3b inhibits N2O reduction in denitrifiers.

Authors:  Jin Chang; Wenyu Gu; Doyoung Park; Jeremy D Semrau; Alan A DiSpirito; Sukhwan Yoon
Journal:  ISME J       Date:  2018-01-12       Impact factor: 10.302

Review 7.  Diversity of bet-hedging strategies in microbial communities-Recent cases and insights.

Authors:  Luiza P Morawska; Jhonatan A Hernandez-Valdes; Oscar P Kuipers
Journal:  WIREs Mech Dis       Date:  2021-11-01

8.  The Di-Iron Protein YtfE Is a Nitric Oxide-Generating Nitrite Reductase Involved in the Management of Nitrosative Stress.

Authors:  Jason C Crack; Basema K Balasiny; Sophie P Bennett; Matthew D Rolfe; Afonso Froes; Fraser MacMillan; Jeffrey Green; Jeffrey A Cole; Nick E Le Brun
Journal:  J Am Chem Soc       Date:  2022-04-13       Impact factor: 16.383

9.  Intergenomic comparisons highlight modularity of the denitrification pathway and underpin the importance of community structure for N2O emissions.

Authors:  Daniel R H Graf; Christopher M Jones; Sara Hallin
Journal:  PLoS One       Date:  2014-12-01       Impact factor: 3.240

10.  An improved medium for the anaerobic growth of Paracoccus denitrificans Pd1222.

Authors:  Stefanie M Hahnke; Philipp Moosmann; Tobias J Erb; Marc Strous
Journal:  Front Microbiol       Date:  2014-01-31       Impact factor: 5.640

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