Literature DB >> 19246383

Multiple posttranscriptional regulatory mechanisms partner to control ethanolamine utilization in Enterococcus faecalis.

Kristina A Fox1, Arati Ramesh, Jennifer E Stearns, Agathe Bourgogne, Angelica Reyes-Jara, Wade C Winkler, Danielle A Garsin.   

Abstract

Ethanolamine, a product of the breakdown of phosphatidylethanolamine from cell membranes, is abundant in the human intestinal tract and in processed foods. Effective utilization of ethanolamine as a carbon and nitrogen source may provide a survival advantage to bacteria that inhabit the gastrointestinal tract and may influence the virulence of pathogens. In this work, we describe a unique series of posttranscriptional regulatory strategies that influence expression of ethanolamine utilization genes (eut) in Enterococcus, Clostridium, and Listeria species. One of these mechanisms requires an unusual 2-component regulatory system. Regulation involves specific sensing of ethanolamine by a sensor histidine kinase (EutW), resulting in autophosphorylation and subsequent phosphoryl transfer to a response regulator (EutV) containing a RNA-binding domain. Our data suggests that EutV is likely to affect downstream gene expression by interacting with conserved transcription termination signals located within the eut locus. Breakdown of ethanolamine requires adenosylcobalamin (AdoCbl) as a cofactor, and, intriguingly, we also identify an intercistronic AdoCbl riboswitch that has a predicted structure different from previously established AdoCbl riboswitches. We demonstrate that association of AdoCbl to this riboswitch prevents formation of an intrinsic transcription terminator element located within the intercistronic region. Together, these results suggest an intricate and carefully coordinated interplay of multiple regulatory strategies for control of ethanolamine utilization genes. Gene expression appears to be directed by overlapping posttranscriptional regulatory mechanisms, each responding to a particular metabolic signal, conceptually akin to regulation by multiple DNA-binding transcription factors.

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Year:  2009        PMID: 19246383      PMCID: PMC2647976          DOI: 10.1073/pnas.0812194106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

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Authors:  G A Soukup; R R Breaker
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Review 3.  ANTAR: an RNA-binding domain in transcription antitermination regulatory proteins.

Authors:  Chengyi J Shu; Igor B Zhulin
Journal:  Trends Biochem Sci       Date:  2002-01       Impact factor: 13.807

4.  Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis.

Authors:  I T Paulsen; L Banerjei; G S A Myers; K E Nelson; R Seshadri; T D Read; D E Fouts; J A Eisen; S R Gill; J F Heidelberg; H Tettelin; R J Dodson; L Umayam; L Brinkac; M Beanan; S Daugherty; R T DeBoy; S Durkin; J Kolonay; R Madupu; W Nelson; J Vamathevan; B Tran; J Upton; T Hansen; J Shetty; H Khouri; T Utterback; D Radune; K A Ketchum; B A Dougherty; C M Fraser
Journal:  Science       Date:  2003-03-28       Impact factor: 47.728

5.  Genetic control by a metabolite binding mRNA.

Authors:  Ali Nahvi; Narasimhan Sudarsan; Margaret S Ebert; Xiang Zou; Kenneth L Brown; Ronald R Breaker
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6.  Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression.

Authors:  Wade Winkler; Ali Nahvi; Ronald R Breaker
Journal:  Nature       Date:  2002-10-16       Impact factor: 49.962

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8.  Differential expression of virulence-related genes in Enterococcus faecalis in response to biological cues in serum and urine.

Authors:  Brett D Shepard; Michael S Gilmore
Journal:  Infect Immun       Date:  2002-08       Impact factor: 3.441

9.  Regulation of the vitamin B12 metabolism and transport in bacteria by a conserved RNA structural element.

Authors:  Alexey G Vitreschak; Dmitry A Rodionov; Andrey A Mironov; Mikhail S Gelfand
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10.  Rfam: updates to the RNA families database.

Authors:  Paul P Gardner; Jennifer Daub; John G Tate; Eric P Nawrocki; Diana L Kolbe; Stinus Lindgreen; Adam C Wilkinson; Robert D Finn; Sam Griffiths-Jones; Sean R Eddy; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2008-10-25       Impact factor: 16.971

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  51 in total

1.  NasT-mediated antitermination plays an essential role in the regulation of the assimilatory nitrate reductase operon in Azotobacter vinelandii.

Authors:  Baomin Wang; Leland S Pierson; Christopher Rensing; Malkanthi K Gunatilaka; Christina Kennedy
Journal:  Appl Environ Microbiol       Date:  2012-07-06       Impact factor: 4.792

Review 2.  Structure and function of HWE/HisKA2-family sensor histidine kinases.

Authors:  Julien Herrou; Sean Crosson; Aretha Fiebig
Journal:  Curr Opin Microbiol       Date:  2017-02-11       Impact factor: 7.934

3.  Cobalamin riboswitches exhibit a broad range of ability to discriminate between methylcobalamin and adenosylcobalamin.

Authors:  Jacob T Polaski; Samantha M Webster; James E Johnson; Robert T Batey
Journal:  J Biol Chem       Date:  2017-05-08       Impact factor: 5.157

Review 4.  Diverse bacterial microcompartment organelles.

Authors:  Chiranjit Chowdhury; Sharmistha Sinha; Sunny Chun; Todd O Yeates; Thomas A Bobik
Journal:  Microbiol Mol Biol Rev       Date:  2014-09       Impact factor: 11.056

5.  Riboswitches. A riboswitch-containing sRNA controls gene expression by sequestration of a response regulator.

Authors:  Sruti DebRoy; Margo Gebbie; Arati Ramesh; Jonathan R Goodson; Melissa R Cruz; Ambro van Hoof; Wade C Winkler; Danielle A Garsin
Journal:  Science       Date:  2014-08-22       Impact factor: 47.728

6.  Transcription antitermination by a phosphorylated response regulator and cobalamin-dependent termination at a B₁₂ riboswitch contribute to ethanolamine utilization in Enterococcus faecalis.

Authors:  Kris Ann Baker; Marta Perego
Journal:  J Bacteriol       Date:  2011-03-25       Impact factor: 3.490

7.  Proteomic Delineation of the ArcA Regulon in Salmonella Typhimurium During Anaerobiosis.

Authors:  Zhen Wang; Jingjing Sun; Tingying Xia; Yanhua Liu; Jiaqi Fu; Yat Kei Lo; Cheng Chang; Aixin Yan; Xiaoyun Liu
Journal:  Mol Cell Proteomics       Date:  2018-07-23       Impact factor: 5.911

8.  Comparative genomics of ethanolamine utilization.

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Journal:  J Bacteriol       Date:  2009-09-25       Impact factor: 3.490

9.  Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes.

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Review 10.  A decade of riboswitches.

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Journal:  Cell       Date:  2013-01-17       Impact factor: 41.582

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