Literature DB >> 24242183

Sex- and age-interacting eQTLs in human complex diseases.

Chen Yao1, Roby Joehanes, Andrew D Johnson, Tianxiao Huan, Tõnu Esko, Saixia Ying, Jane E Freedman, Joanne Murabito, Kathryn L Lunetta, Andres Metspalu, Peter J Munson, Daniel Levy.   

Abstract

Many complex human diseases exhibit sex or age differences in gene expression. However, the presence and the extent of genotype-specific variations in gene regulation are largely unknown. Here, we report results of a comprehensive analysis of expression regulation of genetic variation related to 11,672 complex disease-associated SNPs as a function of sex and age in whole-blood-derived RNA from 5254 individuals. At false discovery rate <0.05, we identified 14 sex- and 10 age-interacting expression quantitative trait loci (eQTLs). We show that these eQTLs are also associated with many sex- or age-associated traits. These findings provide important context regarding the regulation of phenotypes by genotype-environment interaction.

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Year:  2013        PMID: 24242183      PMCID: PMC3943525          DOI: 10.1093/hmg/ddt582

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  61 in total

1.  Sample size determination for studies of gene-environment interaction.

Authors:  J A Luan; M Y Wong; N E Day; N J Wareham
Journal:  Int J Epidemiol       Date:  2001-10       Impact factor: 7.196

Review 2.  Gene-environment interactions in human diseases.

Authors:  David J Hunter
Journal:  Nat Rev Genet       Date:  2005-04       Impact factor: 53.242

3.  Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.

Authors:  Lucia A Hindorff; Praveen Sethupathy; Heather A Junkins; Erin M Ramos; Jayashri P Mehta; Francis S Collins; Teri A Manolio
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-27       Impact factor: 11.205

4.  SNAP: a web-based tool for identification and annotation of proxy SNPs using HapMap.

Authors:  Andrew D Johnson; Robert E Handsaker; Sara L Pulit; Marcia M Nizzari; Christopher J O'Donnell; Paul I W de Bakker
Journal:  Bioinformatics       Date:  2008-10-30       Impact factor: 6.937

5.  The Third Generation Cohort of the National Heart, Lung, and Blood Institute's Framingham Heart Study: design, recruitment, and initial examination.

Authors:  Greta Lee Splansky; Diane Corey; Qiong Yang; Larry D Atwood; L Adrienne Cupples; Emelia J Benjamin; Ralph B D'Agostino; Caroline S Fox; Martin G Larson; Joanne M Murabito; Christopher J O'Donnell; Ramachandran S Vasan; Philip A Wolf; Daniel Levy
Journal:  Am J Epidemiol       Date:  2007-03-19       Impact factor: 4.897

6.  Human aging is characterized by focused changes in gene expression and deregulation of alternative splicing.

Authors:  Lorna W Harries; Dena Hernandez; William Henley; Andrew R Wood; Alice C Holly; Rachel M Bradley-Smith; Hanieh Yaghootkar; Ambarish Dutta; Anna Murray; Timothy M Frayling; Jack M Guralnik; Stefania Bandinelli; Andrew Singleton; Luigi Ferrucci; David Melzer
Journal:  Aging Cell       Date:  2011-07-19       Impact factor: 9.304

7.  Claims of sex differences: an empirical assessment in genetic associations.

Authors:  Nikolaos A Patsopoulos; Athina Tatsioni; John P A Ioannidis
Journal:  JAMA       Date:  2007-08-22       Impact factor: 56.272

8.  Genomewide association study of leprosy.

Authors:  Fu-Ren Zhang; Wei Huang; Shu-Min Chen; Liang-Dan Sun; Hong Liu; Yi Li; Yong Cui; Xiao-Xiao Yan; Hai-Tao Yang; Rong-De Yang; Tong-Sheng Chu; Chi Zhang; Lin Zhang; Jian-Wen Han; Gong-Qi Yu; Cheng Quan; Yong-Xiang Yu; Zheng Zhang; Ben-Qing Shi; Lian-Hua Zhang; Hui Cheng; Chang-Yuan Wang; Yan Lin; Hou-Feng Zheng; Xi-An Fu; Xian-Bo Zuo; Qiang Wang; Heng Long; Yi-Ping Sun; Yi-Lin Cheng; Hong-Qing Tian; Fu-Sheng Zhou; Hua-Xu Liu; Wen-Sheng Lu; Su-Min He; Wen-Li Du; Min Shen; Qi-Yi Jin; Ying Wang; Hui-Qi Low; Tantoso Erwin; Ning-Han Yang; Jin-Yong Li; Xin Zhao; Yue-Lin Jiao; Li-Guo Mao; Gang Yin; Zhen-Xia Jiang; Xiao-Dong Wang; Jing-Ping Yu; Zong-Hou Hu; Cui-Hua Gong; Yu-Qiang Liu; Rui-Yu Liu; De-Min Wang; Dong Wei; Jin-Xian Liu; Wei-Kun Cao; Hong-Zhong Cao; Yong-Ping Li; Wei-Guo Yan; Shi-Yu Wei; Kui-Jun Wang; Martin L Hibberd; Sen Yang; Xue-Jun Zhang; Jian-Jun Liu
Journal:  N Engl J Med       Date:  2009-12-16       Impact factor: 91.245

9.  Adjustment for population stratification via principal components in association analysis of rare variants.

Authors:  Yiwei Zhang; Weihua Guan; Wei Pan
Journal:  Genet Epidemiol       Date:  2012-10-12       Impact factor: 2.135

10.  Gene set enrichment analyses revealed differences in gene expression patterns between males and females.

Authors:  Wei Zhang; R Stephanie Huang; Shiwei Duan; M Eileen Dolan
Journal:  In Silico Biol       Date:  2009
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  32 in total

1.  Using Transcriptomic Hidden Variables to Infer Context-Specific Genotype Effects in the Brain.

Authors:  Bernard Ng; William Casazza; Ellis Patrick; Shinya Tasaki; Gherman Novakovsky; Daniel Felsky; Yiyi Ma; David A Bennett; Chris Gaiteri; Philip L De Jager; Sara Mostafavi
Journal:  Am J Hum Genet       Date:  2019-08-22       Impact factor: 11.025

2.  Tissue-specific sex differences in human gene expression.

Authors:  Irfahan Kassam; Yang Wu; Jian Yang; Peter M Visscher; Allan F McRae
Journal:  Hum Mol Genet       Date:  2019-09-01       Impact factor: 6.150

3.  Identification of context-dependent expression quantitative trait loci in whole blood.

Authors:  Daria V Zhernakova; Patrick Deelen; Martijn Vermaat; Maarten van Iterson; Michiel van Galen; Wibowo Arindrarto; Peter van 't Hof; Hailiang Mei; Freerk van Dijk; Harm-Jan Westra; Marc Jan Bonder; Jeroen van Rooij; Marijn Verkerk; P Mila Jhamai; Matthijs Moed; Szymon M Kielbasa; Jan Bot; Irene Nooren; René Pool; Jenny van Dongen; Jouke J Hottenga; Coen D A Stehouwer; Carla J H van der Kallen; Casper G Schalkwijk; Alexandra Zhernakova; Yang Li; Ettje F Tigchelaar; Niek de Klein; Marian Beekman; Joris Deelen; Diana van Heemst; Leonard H van den Berg; Albert Hofman; André G Uitterlinden; Marleen M J van Greevenbroek; Jan H Veldink; Dorret I Boomsma; Cornelia M van Duijn; Cisca Wijmenga; P Eline Slagboom; Morris A Swertz; Aaron Isaacs; Joyce B J van Meurs; Rick Jansen; Bastiaan T Heijmans; Peter A C 't Hoen; Lude Franke
Journal:  Nat Genet       Date:  2016-12-05       Impact factor: 38.330

4.  Gene-by-Sex Interactions in Mitochondrial Functions and Cardio-Metabolic Traits.

Authors:  Frode Norheim; Yehudit Hasin-Brumshtein; Laurent Vergnes; Karthickeyan Chella Krishnan; Calvin Pan; Marcus M Seldin; Simon T Hui; Margarete Mehrabian; Zhiqiang Zhou; Sonul Gupta; Brian W Parks; Axel Walch; Karen Reue; Susanna M Hofmann; Arthur P Arnold; Aldons J Lusis
Journal:  Cell Metab       Date:  2019-01-10       Impact factor: 27.287

5.  Sex differences in genetic architecture in the UK Biobank.

Authors:  Elena Bernabeu; Oriol Canela-Xandri; Konrad Rawlik; Andrea Talenti; James Prendergast; Albert Tenesa
Journal:  Nat Genet       Date:  2021-09-07       Impact factor: 38.330

6.  Genetic Mechanisms Leading to Sex Differences Across Common Diseases and Anthropometric Traits.

Authors:  Michela Traglia; Dina Bseiso; Alexander Gusev; Brigid Adviento; Daniel S Park; Joel A Mefford; Noah Zaitlen; Lauren A Weiss
Journal:  Genetics       Date:  2016-12-14       Impact factor: 4.562

7.  Approaches for establishing the function of regulatory genetic variants involved in disease.

Authors:  Julian Charles Knight
Journal:  Genome Med       Date:  2014-10-31       Impact factor: 11.117

8.  The impact of sex on gene expression across human tissues.

Authors:  Meritxell Oliva; Manuel Muñoz-Aguirre; Sarah Kim-Hellmuth; Valentin Wucher; Ariel D H Gewirtz; Daniel J Cotter; Princy Parsana; Silva Kasela; Brunilda Balliu; Ana Viñuela; Stephane E Castel; Pejman Mohammadi; François Aguet; Yuxin Zou; Ekaterina A Khramtsova; Andrew D Skol; Diego Garrido-Martín; Ferran Reverter; Andrew Brown; Patrick Evans; Eric R Gamazon; Anthony Payne; Rodrigo Bonazzola; Alvaro N Barbeira; Andrew R Hamel; Angel Martinez-Perez; José Manuel Soria; Brandon L Pierce; Matthew Stephens; Eleazar Eskin; Emmanouil T Dermitzakis; Ayellet V Segrè; Hae Kyung Im; Barbara E Engelhardt; Kristin G Ardlie; Stephen B Montgomery; Alexis J Battle; Tuuli Lappalainen; Roderic Guigó; Barbara E Stranger
Journal:  Science       Date:  2020-09-11       Impact factor: 47.728

Review 9.  Genetics of gene expression in immunity to infection.

Authors:  Benjamin P Fairfax; Julian C Knight
Journal:  Curr Opin Immunol       Date:  2014-07-31       Impact factor: 7.486

10.  Spurious transcription factor binding: non-functional or genetically redundant?

Authors:  Mikhail Spivakov
Journal:  Bioessays       Date:  2014-05-30       Impact factor: 4.345

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