Literature DB >> 24237314

FairyTALE: a high-throughput TAL effector synthesis platform.

Jing Liang1, Ran Chao, Zhanar Abil, Zehua Bao, Huimin Zhao.   

Abstract

Recombinant transcription activator-like effectors (TALEs) have been effectively used for genome editing and gene regulation applications. Due to their remarkable modularity, TALEs can be tailored to specifically target almost any user-defined DNA sequences. Here, we introduce fairyTALE, a liquid phase high-throughput TALE synthesis platform capable of producing TALE-nucleases, activators, and repressors that recognize DNA sequences between 14 and 31 bp. It features a highly efficient reaction scheme, a flexible functionalization platform, and fully automated robotic liquid handling that enable the production of hundreds of expression-ready TALEs within a single day with over 98% assembly efficiency at a material cost of just $5 per TALE. As proof of concept, we synthesized and tested 90 TALEs, each recognizing 27 bp, without restrictions on their sequence composition. 96% of these TALEs were found to be functional, while sequencing confirmation revealed that the nonfunctional constructs were all correctly assembled.

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Year:  2013        PMID: 24237314     DOI: 10.1021/sb400109p

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  22 in total

1.  A plug-and-play pathway refactoring workflow for natural product research in Escherichia coli and Saccharomyces cerevisiae.

Authors:  Hengqian Ren; Pingfan Hu; Huimin Zhao
Journal:  Biotechnol Bioeng       Date:  2017-06-05       Impact factor: 4.530

Review 2.  Application of TALEs, CRISPR/Cas and sRNAs as trans-acting regulators in prokaryotes.

Authors:  Matthew F Copeland; Mark C Politz; Brian F Pfleger
Journal:  Curr Opin Biotechnol       Date:  2014-03-12       Impact factor: 9.740

Review 3.  Accelerated genome engineering through multiplexing.

Authors:  Zehua Bao; Ryan E Cobb; Huimin Zhao
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2015-09-22

4.  Using engineered endonucleases to create knockout and knockin zebrafish models.

Authors:  Victoria M Bedell; Stephen C Ekker
Journal:  Methods Mol Biol       Date:  2015

Review 5.  Recent advances in DNA assembly technologies.

Authors:  Ran Chao; Yongbo Yuan; Huimin Zhao
Journal:  FEMS Yeast Res       Date:  2015-01-14       Impact factor: 2.796

Review 6.  Rapid prototyping of microbial cell factories via genome-scale engineering.

Authors:  Tong Si; Han Xiao; Huimin Zhao
Journal:  Biotechnol Adv       Date:  2014-11-20       Impact factor: 14.227

7.  Fully Automated One-Step Synthesis of Single-Transcript TALEN Pairs Using a Biological Foundry.

Authors:  Ran Chao; Jing Liang; Ipek Tasan; Tong Si; Linyang Ju; Huimin Zhao
Journal:  ACS Synth Biol       Date:  2017-02-02       Impact factor: 5.110

Review 8.  TALEN-mediated genome engineering to generate targeted mice.

Authors:  Daniel Sommer; Annika E Peters; Ann-Kathrin Baumgart; Marc Beyer
Journal:  Chromosome Res       Date:  2015-02       Impact factor: 5.239

Review 9.  Use of genome-editing tools to treat sickle cell disease.

Authors:  Ipek Tasan; Surbhi Jain; Huimin Zhao
Journal:  Hum Genet       Date:  2016-06-01       Impact factor: 4.132

Review 10.  Standardization for natural product synthetic biology.

Authors:  Huimin Zhao; Marnix H Medema
Journal:  Nat Prod Rep       Date:  2016-06-17       Impact factor: 13.423

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