Literature DB >> 25408414

Using engineered endonucleases to create knockout and knockin zebrafish models.

Victoria M Bedell1, Stephen C Ekker.   

Abstract

Over the last few years, the technology to create targeted knockout and knockin zebrafish animals has exploded. We have gained the ability to create targeted knockouts through the use of zinc finger nucleases (ZFNs), transcription activator-like effector nucleases (TALENs) and clustered regularly interspaced short palindromic repeats/CRISPR associated system (CRISPR/Cas). Furthermore, using the high-efficiency TALEN system, we were able to create knockin zebrafish using a single-stranded DNA (ssDNA) protocol described here. Through the use of these technologies, the zebrafish has become a valuable vertebrate model and an excellent bridge between the invertebrate and mammalian model systems for the study of human disease.

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Year:  2015        PMID: 25408414      PMCID: PMC4385738          DOI: 10.1007/978-1-4939-1862-1_17

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  43 in total

1.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

2.  Methods for reverse genetic screening in zebrafish by resequencing and TILLING.

Authors:  Raman Sood; Milton A English; MaryPat Jones; James Mullikin; Duen-Mei Wang; Maria Anderson; Dongying Wu; Settara C Chandrasekharappa; Jun Yu; Jinghui Zhang; P Paul Liu
Journal:  Methods       Date:  2006-07       Impact factor: 3.608

3.  Structure of Aart, a designed six-finger zinc finger peptide, bound to DNA.

Authors:  David J Segal; Justin W Crotty; Mital S Bhakta; Carlos F Barbas; Nancy C Horton
Journal:  J Mol Biol       Date:  2006-08-11       Impact factor: 5.469

4.  A simple cipher governs DNA recognition by TAL effectors.

Authors:  Matthew J Moscou; Adam J Bogdanove
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

Review 5.  Vectors and techniques for ectopic gene expression in zebrafish.

Authors:  T M Hyatt; S C Ekker
Journal:  Methods Cell Biol       Date:  1999       Impact factor: 1.441

6.  De novo-engineered transcription activator-like effector (TALE) hybrid nuclease with novel DNA binding specificity creates double-strand breaks.

Authors:  Magdy M Mahfouz; Lixin Li; Md Shamimuzzaman; Anjar Wibowo; Xiaoyun Fang; Jian-Kang Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-24       Impact factor: 11.205

Review 7.  Forward and reverse genetic approaches for the analysis of vertebrate development in the zebrafish.

Authors:  Nathan D Lawson; Scot A Wolfe
Journal:  Dev Cell       Date:  2011-07-19       Impact factor: 12.270

Review 8.  ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering.

Authors:  Thomas Gaj; Charles A Gersbach; Carlos F Barbas
Journal:  Trends Biotechnol       Date:  2013-05-09       Impact factor: 19.536

9.  Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting.

Authors:  Tomas Cermak; Erin L Doyle; Michelle Christian; Li Wang; Yong Zhang; Clarice Schmidt; Joshua A Baller; Nikunj V Somia; Adam J Bogdanove; Daniel F Voytas
Journal:  Nucleic Acids Res       Date:  2011-04-14       Impact factor: 16.971

10.  Genome editing with RNA-guided Cas9 nuclease in zebrafish embryos.

Authors:  Nannan Chang; Changhong Sun; Lu Gao; Dan Zhu; Xiufei Xu; Xiaojun Zhu; Jing-Wei Xiong; Jianzhong Jeff Xi
Journal:  Cell Res       Date:  2013-03-26       Impact factor: 25.617

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  6 in total

Review 1.  Advanced technologies for genetically manipulating the silkworm Bombyx mori, a model Lepidopteran insect.

Authors:  Hanfu Xu; David A O'Brochta
Journal:  Proc Biol Sci       Date:  2015-07-07       Impact factor: 5.349

2.  An efficient platform for generating somatic point mutations with germline transmission in the zebrafish by CRISPR/Cas9-mediated gene editing.

Authors:  Yibo Zhang; Zhiwei Zhang; Wei Ge
Journal:  J Biol Chem       Date:  2018-03-02       Impact factor: 5.157

3.  Disruption of tmc1/2a/2b Genes in Zebrafish Reveals Subunit Requirements in Subtypes of Inner Ear Hair Cells.

Authors:  Eliot T Smith; Itallia Pacentine; Anna Shipman; Matthew Hill; Teresa Nicolson
Journal:  J Neurosci       Date:  2020-05-05       Impact factor: 6.167

4.  Panx1b Modulates the Luminance Response and Direction of Locomotion in the Zebrafish.

Authors:  Nickie Safarian; Sarah Houshangi-Tabrizi; Christiane Zoidl; Georg R Zoidl
Journal:  Int J Mol Sci       Date:  2021-10-29       Impact factor: 5.923

Review 5.  The Rise of CRISPR/Cas for Genome Editing in Stem Cells.

Authors:  Bing Shui; Liz Hernandez Matias; Yi Guo; Ying Peng
Journal:  Stem Cells Int       Date:  2016-01-06       Impact factor: 5.443

6.  Optimized knock-in of point mutations in zebrafish using CRISPR/Cas9.

Authors:  Sergey V Prykhozhij; Charlotte Fuller; Shelby L Steele; Chansey J Veinotte; Babak Razaghi; Johane M Robitaille; Christopher R McMaster; Adam Shlien; David Malkin; Jason N Berman
Journal:  Nucleic Acids Res       Date:  2018-09-28       Impact factor: 16.971

  6 in total

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