Literature DB >> 24235297

Prostate MRI segmentation using learned semantic knowledge and graph cuts.

Dwarikanath Mahapatra, Joachim M Buhmann.   

Abstract

We propose a fully automated method for prostate segmentation using random forests (RFs) and graph cuts. A volume of interest (VOI) is automatically selected using supervoxel segmentation, and its subsequent classification using image features and RF classifiers. The VOIs probability map is generated using image and context features, and a second set of RF classifiers. The negative log-likelihood of the probability maps acts as the penalty cost in a second-order Markov random field cost function. Semantic information from the second set of RF classifiers is an important measure of each feature to the classification task, which contributes to formulating the smoothness cost. The cost function is optimized using graph cuts to get the final segmentation of the prostate. With average dice metric (DM) (on the training set) and DM (on the test set), our experimental results show that inclusion of the context and semantic information contributes to higher segmentation accuracy than other methods.

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Year:  2013        PMID: 24235297     DOI: 10.1109/TBME.2013.2289306

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  22 in total

1.  A semiautomatic approach for prostate segmentation in MR images using local texture classification and statistical shape modeling.

Authors:  Maysam Shahedi; Martin Halicek; Qinmei Li; Lizhi Liu; Zhenfeng Zhang; Sadhna Verma; David M Schuster; Baowei Fei
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2019-03-08

2.  Automated Segmentation of Tissues Using CT and MRI: A Systematic Review.

Authors:  Leon Lenchik; Laura Heacock; Ashley A Weaver; Robert D Boutin; Tessa S Cook; Jason Itri; Christopher G Filippi; Rao P Gullapalli; James Lee; Marianna Zagurovskaya; Tara Retson; Kendra Godwin; Joey Nicholson; Ponnada A Narayana
Journal:  Acad Radiol       Date:  2019-08-10       Impact factor: 3.173

3.  Accuracy Validation of an Automated Method for Prostate Segmentation in Magnetic Resonance Imaging.

Authors:  Maysam Shahedi; Derek W Cool; Glenn S Bauman; Matthew Bastian-Jordan; Aaron Fenster; Aaron D Ward
Journal:  J Digit Imaging       Date:  2017-12       Impact factor: 4.056

4.  Automatic cardiac segmentation using semantic information from random forests.

Authors:  Dwarikanath Mahapatra
Journal:  J Digit Imaging       Date:  2014-12       Impact factor: 4.056

5.  [Application of U-shaped convolutional neural network in auto segmentation and reconstruction of 3D prostate model in laparoscopic prostatectomy navigation].

Authors:  Y Yan; H Z Xia; X S Li; W He; X H Zhu; Z Y Zhang; C L Xiao; Y Q Liu; H Huang; L H He; J Lu
Journal:  Beijing Da Xue Xue Bao Yi Xue Ban       Date:  2019-06-18

6.  Boundary Restored Network for Subpleural Pulmonary Lesion Segmentation on Ultrasound Images at Local and Global Scales.

Authors:  Yupeng Xu; Yi Zhang; Ke Bi; Zhiyu Ning; Lisha Xu; Mengjun Shen; Guoying Deng; Yin Wang
Journal:  J Digit Imaging       Date:  2020-10       Impact factor: 4.056

7.  Iterative Label Denoising Network: Segmenting Male Pelvic Organs in CT From 3D Bounding Box Annotations.

Authors:  Shuai Wang; Qian Wang; Yeqin Shao; Liangqiong Qu; Chunfeng Lian; Jun Lian; Dinggang Shen
Journal:  IEEE Trans Biomed Eng       Date:  2020-01-27       Impact factor: 4.538

8.  A supervoxel-based segmentation method for prostate MR images.

Authors:  Zhiqiang Tian; Lizhi Liu; Zhenfeng Zhang; Jianru Xue; Baowei Fei
Journal:  Med Phys       Date:  2017-02       Impact factor: 4.071

9.  Visual saliency-based active learning for prostate magnetic resonance imaging segmentation.

Authors:  Dwarikanath Mahapatra; Joachim M Buhmann
Journal:  J Med Imaging (Bellingham)       Date:  2016-02-19

Review 10.  Computer-aided Detection of Prostate Cancer with MRI: Technology and Applications.

Authors:  Lizhi Liu; Zhiqiang Tian; Zhenfeng Zhang; Baowei Fei
Journal:  Acad Radiol       Date:  2016-04-25       Impact factor: 3.173

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