Literature DB >> 24215641

New vectors for epitope tagging and gene disruption in Schizosaccharomyces pombe.

Mariana C Gadaleta1, Osamu Iwasaki, Chiaki Noguchi, Ken-ichi Noma, Eishi Noguchi.   

Abstract

We describe a series of new vectors for PCR-based epitope tagging and gene disruption in the fission yeast Schizosaccharomyces pombe, an exceptional model organism for the study of cellular processes. The vectors are designed for amplification of gene-targeting DNA cassettes and integration into specific genetic loci, allowing expression of proteins fused to 12 tandem copies of the Pk (V5) epitope or 5 tandem copies of the FLAG epitope with a glycine linker. These vectors are available with various antibiotic or nutritional markers and are useful for protein studies using biochemical and cell biological methods. We also describe new vectors for fluorescent protein-tagging and gene disruption using ura4MX6, LEU2MX6, and his3MX6 selection markers, allowing researchers in the S. pombe community to disrupt genes and manipulate genomic loci using primer sets already available for the widely used pFA6a-MX6 system. Our new vectors may also be useful for gene manipulation in Saccharomyces cerevisiae.

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Year:  2013        PMID: 24215641      PMCID: PMC3880554          DOI: 10.2144/000114100

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  17 in total

1.  Vectors for the expression of tagged proteins in Schizosaccharomyces pombe.

Authors:  R A Craven; D J Griffiths; K S Sheldrick; R E Randall; I M Hagan; A M Carr
Journal:  Gene       Date:  1998-10-09       Impact factor: 3.688

2.  High-efficiency gene targeting in Schizosaccharomyces pombe using a modular, PCR-based approach with long tracts of flanking homology.

Authors:  M D Krawchuk; W P Wahls
Journal:  Yeast       Date:  1999-09-30       Impact factor: 3.239

3.  Rad52 forms DNA repair and recombination centers during S phase.

Authors:  M Lisby; R Rothstein; U H Mortensen
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-17       Impact factor: 11.205

4.  Identification of an epitope on the P and V proteins of simian virus 5 that distinguishes between two isolates with different biological characteristics.

Authors:  J A Southern; D F Young; F Heaney; W K Baumgärtner; R E Randall
Journal:  J Gen Virol       Date:  1991-07       Impact factor: 3.891

5.  New drug-resistant cassettes for gene disruption and epitope tagging in Schizosaccharomyces pombe.

Authors:  Masamitsu Sato; Susheela Dhut; Takashi Toda
Journal:  Yeast       Date:  2005-05       Impact factor: 3.239

6.  Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae.

Authors:  A L Goldstein; J H McCusker
Journal:  Yeast       Date:  1999-10       Impact factor: 3.239

7.  Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae.

Authors:  M S Longtine; A McKenzie; D J Demarini; N G Shah; A Wach; A Brachat; P Philippsen; J R Pringle
Journal:  Yeast       Date:  1998-07       Impact factor: 3.239

8.  Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe.

Authors:  J Bähler; J Q Wu; M S Longtine; N G Shah; A McKenzie; A B Steever; A Wach; P Philippsen; J R Pringle
Journal:  Yeast       Date:  1998-07       Impact factor: 3.239

9.  Epigenetic regulation of condensin-mediated genome organization during the cell cycle and upon DNA damage through histone H3 lysine 56 acetylation.

Authors:  Atsunari Tanaka; Hideki Tanizawa; Sira Sriswasdi; Osamu Iwasaki; Atreyi G Chatterjee; David W Speicher; Henry L Levin; Eishi Noguchi; Ken-Ichi Noma
Journal:  Mol Cell       Date:  2012-10-18       Impact factor: 17.970

10.  New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae.

Authors:  A Wach; A Brachat; R Pöhlmann; P Philippsen
Journal:  Yeast       Date:  1994-12       Impact factor: 3.239

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  11 in total

1.  Chromatin immunoprecipitation to detect DNA replication and repair factors.

Authors:  Mariana C Gadaleta; Osamu Iwasaki; Chiaki Noguchi; Ken-Ichi Noma; Eishi Noguchi
Journal:  Methods Mol Biol       Date:  2015

2.  Architectural alterations of the fission yeast genome during the cell cycle.

Authors:  Hideki Tanizawa; Kyoung-Dong Kim; Osamu Iwasaki; Ken-Ichi Noma
Journal:  Nat Struct Mol Biol       Date:  2017-10-09       Impact factor: 15.369

3.  Interaction of the Jhd2 Histone H3 Lys-4 Demethylase with Chromatin Is Controlled by Histone H2A Surfaces and Restricted by H2B Ubiquitination.

Authors:  Fu Huang; Saravanan Ramakrishnan; Srijana Pokhrel; Christian Pflueger; Timothy J Parnell; Margaret M Kasten; Simon L Currie; Niraja Bhachech; Masami Horikoshi; Barbara J Graves; Bradley R Cairns; Srividya Bhaskara; Mahesh B Chandrasekharan
Journal:  J Biol Chem       Date:  2015-10-08       Impact factor: 5.157

4.  Evolution of Substrates and Components of the Pro/N-Degron Pathway.

Authors:  Shun-Jia Chen; Artem Melnykov; Alexander Varshavsky
Journal:  Biochemistry       Date:  2020-01-02       Impact factor: 3.162

5.  Single-step Marker Switching in Schizosaccharomyces pombe Using a Lithium Acetate Transformation Protocol.

Authors:  Simon D Brown; Alexander Lorenz
Journal:  Bio Protoc       Date:  2016-12-20

6.  Mitochondria-Associated Degradation Pathway (MAD) Function beyond the Outer Membrane.

Authors:  Pin-Chao Liao; Dana M Alessi Wolken; Edith Serrano; Pallavi Srivastava; Liza A Pon
Journal:  Cell Rep       Date:  2020-07-14       Impact factor: 9.423

7.  Ccq1-Raf2 interaction mediates CLRC recruitment to establish heterochromatin at telomeres.

Authors:  Shaohua Shi; Yuanze Zhou; Yanjia Lu; Hong Sun; Jing Xue; Zhenfang Wu; Ming Lei
Journal:  Life Sci Alliance       Date:  2021-09-07

8.  Swi1Timeless Prevents Repeat Instability at Fission Yeast Telomeres.

Authors:  Mariana C Gadaleta; Mukund M Das; Hideki Tanizawa; Ya-Ting Chang; Ken-ichi Noma; Toru M Nakamura; Eishi Noguchi
Journal:  PLoS Genet       Date:  2016-03-18       Impact factor: 5.917

9.  Transcription factors mediate condensin recruitment and global chromosomal organization in fission yeast.

Authors:  Kyoung-Dong Kim; Hideki Tanizawa; Osamu Iwasaki; Ken-Ichi Noma
Journal:  Nat Genet       Date:  2016-08-22       Impact factor: 38.330

10.  Fhl1p protein, a positive transcription factor in Pichia pastoris, enhances the expression of recombinant proteins.

Authors:  Xueyun Zheng; Yimin Zhang; Xinying Zhang; Cheng Li; Xiaoxiao Liu; Ying Lin; Shuli Liang
Journal:  Microb Cell Fact       Date:  2019-11-29       Impact factor: 5.328

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