Literature DB >> 24197310

Identification of highly polymorphic DNA regions in tomato.

B Vosman1, P Arens, W Rus-Kortekaas, M J Smulders.   

Abstract

This paper describes the use of oligonucleotide probes to reveal highly polymorphic DNA regions in pomato. With a (GATA)4 probe the level of polymorphism detected is high enough to identify all 15 tomato cultivars used in this study. Individual plants of one cultivar all showed the same cultivar-specific DNA-finger-print. In an F2-population of self-fertilized cv. Sonatine, GATA-containing loci segregated in a Mendelian (3∶1) fashion. Experiments with in-vitro propagated plant material showed that the DNA-fingerprints are not affected by tissue-culture procedures. This indicates that changes in the genetic integrity, which often accompany in-vitro propagation (somaclonal variation), are not extended to the DNA detected with the (GATA)4 probe. The relative high stability and the Mendelian segregation of (GATA)4-derived DNA-fingerprints make them ideally suited for identification of tomato cultivars.

Entities:  

Year:  1992        PMID: 24197310     DOI: 10.1007/BF00222865

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  18 in total

1.  Characterization of the level, target sites and inheritance of cytosine methylation in tomato nuclear DNA.

Authors:  R Messeguer; M W Ganal; J C Steffens; S D Tanksley
Journal:  Plant Mol Biol       Date:  1991-05       Impact factor: 4.076

2.  Polymorphic simple GATA/GACA repeats in plant genomes.

Authors:  K Weising; F Weigand; A J Driesel; G Kahl; H Zischler; J T Epplen
Journal:  Nucleic Acids Res       Date:  1989-12-11       Impact factor: 16.971

3.  Hypervariability of simple sequences as a general source for polymorphic DNA markers.

Authors:  D Tautz
Journal:  Nucleic Acids Res       Date:  1989-08-25       Impact factor: 16.971

Review 4.  On simple repeated GATCA sequences in animal genomes: a critical reappraisal.

Authors:  J T Epplen
Journal:  J Hered       Date:  1988 Nov-Dec       Impact factor: 2.645

5.  Hypervariable 'minisatellite' regions in human DNA.

Authors:  A J Jeffreys; V Wilson; S L Thein
Journal:  Nature       Date:  1985 Mar 7-13       Impact factor: 49.962

6.  Plant DNA fingerprinting with radioactive and digoxigenated oligonucleotide probes complementary to simple repetitive DNA sequences.

Authors:  K Weising; B Beyermann; J Ramser; G Kahl
Journal:  Electrophoresis       Date:  1991 Feb-Mar       Impact factor: 3.535

7.  Monitoring genomic alterations with a panel of oligonucleotide probes specific for various simple repeat motifs.

Authors:  P Nürnberg; I Barth; E Fuhrmann; C Lenzner; T Losanova; C Peters; H Pöche; G Thiel
Journal:  Electrophoresis       Date:  1991 Feb-Mar       Impact factor: 3.535

8.  Simple sequences are ubiquitous repetitive components of eukaryotic genomes.

Authors:  D Tautz; M Renz
Journal:  Nucleic Acids Res       Date:  1984-05-25       Impact factor: 16.971

9.  Forensic application of DNA 'fingerprints'.

Authors:  P Gill; A J Jeffreys; D J Werrett
Journal:  Nature       Date:  1985 Dec 12-18       Impact factor: 49.962

10.  RFLP analysis of phylogenetic relationships and genetic variation in the genus Lycopersicon.

Authors:  J C Miller; S D Tanksley
Journal:  Theor Appl Genet       Date:  1990-10       Impact factor: 5.699

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  14 in total

1.  FISH mapping and molecular organization of the major repetitive sequences of tomato.

Authors:  Song-Bin Chang; Tae-Jin Yang; Erwin Datema; Joke van Vugt; Ben Vosman; Anja Kuipers; Marie Meznikova; Dóra Szinay; René Klein Lankhorst; Evert Jacobsen; Hans de Jong
Journal:  Chromosome Res       Date:  2008-08-13       Impact factor: 5.239

2.  DNA fingerprinting in botany: past, present, future.

Authors:  Hilde Nybom; Kurt Weising; Björn Rotter
Journal:  Investig Genet       Date:  2014-01-03

3.  Identification of chrysanthemum cultivars and stability of DNA fingerprint patterns.

Authors:  K Wolff; E Zietkiewicz; H Hofstra
Journal:  Theor Appl Genet       Date:  1995-08       Impact factor: 5.699

4.  DNA fingerprinting in rice using oligonucleotide probes specific for simple repetitive DNA sequences.

Authors:  W Ramakishana; M D Lagu; V S Gupta; P K Ranjekar
Journal:  Theor Appl Genet       Date:  1994-06       Impact factor: 5.699

5.  Tissue culture-induced DNA methylation polymorphisms in repetitive DNA of tomato calli and regenerated plants.

Authors:  M J Smulders; W Rus-Kortekaas; B Vosman
Journal:  Theor Appl Genet       Date:  1995-12       Impact factor: 5.699

6.  Oligonucleotide fingerprinting and RAPD analysis of Achillea species: Characterization and long-term monitoring of micropropagated clones.

Authors:  E Wallner; K Weising; R Rompf; G Kahl; B Kopp
Journal:  Plant Cell Rep       Date:  1996-04       Impact factor: 4.570

7.  High-resolution fine mapping of ps-2, a mutated gene conferring functional male sterility in tomato due to non-dehiscent anthers.

Authors:  Benoit Gorguet; Danny Schipper; Adriaan W van Heusden; Pim Lindhout
Journal:  Theor Appl Genet       Date:  2006-08-25       Impact factor: 5.699

8.  Characterisation of sugar beet (Beta vulgaris L. ssp. vulgaris) varieties using microsatellite markers.

Authors:  Marinus J M Smulders; G Danny Esselink; Isabelle Everaert; Jan De Riek; Ben Vosman
Journal:  BMC Genet       Date:  2010-05-18       Impact factor: 2.797

9.  Microsatellite genotyping of carnation varieties.

Authors:  M J M Smulders; Y Noordijk; W Rus-Kortekaas; G M M Bredemeijer; B Vosman
Journal:  Theor Appl Genet       Date:  2002-12-10       Impact factor: 5.699

10.  Genome mapping and molecular breeding of tomato.

Authors:  Majid R Foolad
Journal:  Int J Plant Genomics       Date:  2007
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