Literature DB >> 24196381

The promise of whole-exome sequencing in medical genetics.

Bahareh Rabbani1, Mustafa Tekin2, Nejat Mahdieh3.   

Abstract

Massively parallel DNA-sequencing systems provide sequence of huge numbers of different DNA strands at once. These technologies are revolutionizing our understanding in medical genetics, accelerating health-improvement projects, and ushering to a fully understood personalized medicine in near future. Whole-exome sequencing (WES) is application of the next-generation technology to determine the variations of all coding regions, or exons, of known genes. WES provides coverage of more than 95% of the exons, which contains 85% of disease-causing mutations in Mendelian disorders and many disease-predisposing SNPs throughout the genome. The role of more than 150 genes has been distinguished by means of WES, and this statistics is quickly growing. In this review, the impacts of WES in medical genetics as well as its consequences leading to improve health care are summarized.

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Year:  2013        PMID: 24196381     DOI: 10.1038/jhg.2013.114

Source DB:  PubMed          Journal:  J Hum Genet        ISSN: 1434-5161            Impact factor:   3.172


  142 in total

1.  Truncating neurotrypsin mutation in autosomal recessive nonsyndromic mental retardation.

Authors:  Florence Molinari; Marlene Rio; Virginia Meskenaite; Férechté Encha-Razavi; Joelle Augé; Delphine Bacq; Sylvain Briault; Michel Vekemans; Arnold Munnich; Tania Attié-Bitach; Peter Sonderegger; Laurence Colleaux
Journal:  Science       Date:  2002-11-29       Impact factor: 47.728

2.  Mutations in the DBP-deficiency protein HSD17B4 cause ovarian dysgenesis, hearing loss, and ataxia of Perrault Syndrome.

Authors:  Sarah B Pierce; Tom Walsh; Karen M Chisholm; Ming K Lee; Anne M Thornton; Agata Fiumara; John M Opitz; Ephrat Levy-Lahad; Rachel E Klevit; Mary-Claire King
Journal:  Am J Hum Genet       Date:  2010-07-30       Impact factor: 11.025

Review 3.  What can exome sequencing do for you?

Authors:  Jacek Majewski; Jeremy Schwartzentruber; Emilie Lalonde; Alexandre Montpetit; Nada Jabado
Journal:  J Med Genet       Date:  2011-07-05       Impact factor: 6.318

4.  De novo mutations of the gene encoding the histone acetyltransferase KAT6B cause Genitopatellar syndrome.

Authors:  Michael A Simpson; Charu Deshpande; Dimitra Dafou; Lisenka E L M Vissers; Wesley J Woollard; Susan E Holder; Gabriele Gillessen-Kaesbach; Ronny Derks; Susan M White; Ruthy Cohen-Snuijf; Sarina G Kant; Lies H Hoefsloot; Willie Reardon; Han G Brunner; Ernie M H F Bongers; Richard C Trembath
Journal:  Am J Hum Genet       Date:  2012-01-19       Impact factor: 11.025

5.  Exome sequencing of prostate cancer supports the hypothesis of independent tumour origins.

Authors:  Johan Lindberg; Daniel Klevebring; Wennuan Liu; Mårten Neiman; Jianfeng Xu; Peter Wiklund; Fredrik Wiklund; Ian G Mills; Lars Egevad; Henrik Grönberg
Journal:  Eur Urol       Date:  2012-03-31       Impact factor: 20.096

6.  Mutations in PIGO, a member of the GPI-anchor-synthesis pathway, cause hyperphosphatasia with mental retardation.

Authors:  Peter M Krawitz; Yoshiko Murakami; Jochen Hecht; Ulrike Krüger; Susan E Holder; Geert R Mortier; Barbara Delle Chiaie; Elfride De Baere; Miles D Thompson; Tony Roscioli; Szymon Kielbasa; Taroh Kinoshita; Stefan Mundlos; Peter N Robinson; Denise Horn
Journal:  Am J Hum Genet       Date:  2012-06-07       Impact factor: 11.025

Review 7.  Discovering genotypes underlying human phenotypes: past successes for mendelian disease, future approaches for complex disease.

Authors:  David Botstein; Neil Risch
Journal:  Nat Genet       Date:  2003-03       Impact factor: 38.330

8.  The ClinSeq Project: piloting large-scale genome sequencing for research in genomic medicine.

Authors:  Leslie G Biesecker; James C Mullikin; Flavia M Facio; Clesson Turner; Praveen F Cherukuri; Robert W Blakesley; Gerard G Bouffard; Peter S Chines; Pedro Cruz; Nancy F Hansen; Jamie K Teer; Baishali Maskeri; Alice C Young; Teri A Manolio; Alexander F Wilson; Toren Finkel; Paul Hwang; Andrew Arai; Alan T Remaley; Vandana Sachdev; Robert Shamburek; Richard O Cannon; Eric D Green
Journal:  Genome Res       Date:  2009-07-14       Impact factor: 9.043

Review 9.  Investigation of Mendelian forms of obesity holds out the prospect of personalized medicine.

Authors:  Alexandra I F Blakemore; Philippe Froguel
Journal:  Ann N Y Acad Sci       Date:  2010-12       Impact factor: 5.691

10.  Homozygosity mapping and whole-exome sequencing to detect SLC45A2 and G6PC3 mutations in a single patient with oculocutaneous albinism and neutropenia.

Authors:  Andrew R Cullinane; Thierry Vilboux; Kevin O'Brien; James A Curry; Dawn M Maynard; Hannah Carlson-Donohoe; Carla Ciccone; Thomas C Markello; Meral Gunay-Aygun; Marjan Huizing; William A Gahl
Journal:  J Invest Dermatol       Date:  2011-06-16       Impact factor: 8.551

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  136 in total

1.  Hypoparathyroidism and central diabetes insipidus: in search of the link.

Authors:  Ori Eyal; Asaf Oren; Harald Jüppner; Raz Somech; Annamaria De Bellis; Michael Mannstadt; Auryan Szalat; Margalit Bleiberg; Yosef Weisman; Naomi Weintrob
Journal:  Eur J Pediatr       Date:  2014-11-04       Impact factor: 3.183

2.  Application of Whole Exome Sequencing in the Clinical Diagnosis and Management of Inherited Cardiovascular Diseases in Adults.

Authors:  Sara B Seidelmann; Emily Smith; Lakshman Subrahmanyan; Daniel Dykas; Maen D Abou Ziki; Bani Azari; Fady Hannah-Shmouni; Yuexin Jiang; Joseph G Akar; Mark Marieb; Daniel Jacoby; Allen E Bale; Richard P Lifton; Arya Mani
Journal:  Circ Cardiovasc Genet       Date:  2017-02

3.  The Missing LINC for Genetic Cardiovascular Disease?

Authors:  Megan J Puckelwartz
Journal:  Circ Cardiovasc Genet       Date:  2017-06

4.  A role for genetic susceptibility in sporadic focal segmental glomerulosclerosis.

Authors:  Haiyang Yu; Mykyta Artomov; Sebastian Brähler; M Christine Stander; Ghaidan Shamsan; Matthew G Sampson; J Michael White; Matthias Kretzler; Jeffrey H Miner; Sanjay Jain; Cheryl A Winkler; Robi D Mitra; Jeffrey B Kopp; Mark J Daly; Andrey S Shaw
Journal:  J Clin Invest       Date:  2016-02-22       Impact factor: 14.808

Review 5.  Array comparative genomic hybridization and genomic sequencing in the diagnostics of the causes of congenital anomalies.

Authors:  Krzysztof Szczałuba; Urszula Demkow
Journal:  J Appl Genet       Date:  2016-11-18       Impact factor: 3.240

6.  Inconsistency and features of single nucleotide variants detected in whole exome sequencing versus transcriptome sequencing: A case study in lung cancer.

Authors:  Timothy D O'Brien; Peilin Jia; Junfeng Xia; Uma Saxena; Hailing Jin; Huy Vuong; Pora Kim; Qingguo Wang; Martin J Aryee; Mari Mino-Kenudson; Jeffrey A Engelman; Long P Le; A John Iafrate; Rebecca S Heist; William Pao; Zhongming Zhao
Journal:  Methods       Date:  2015-04-23       Impact factor: 3.608

7.  Development and evaluation of a transfusion medicine genome wide genotyping array.

Authors:  Yuelong Guo; Michael P Busch; Mark Seielstad; Stacy Endres-Dighe; Connie M Westhoff; Brendan Keating; Carolyn Hoppe; Aarash Bordbar; Brian Custer; Adam S Butterworth; Tamir Kanias; Alan E Mast; Steve Kleinman; Yontao Lu; Grier P Page
Journal:  Transfusion       Date:  2018-11-20       Impact factor: 3.157

Review 8.  The use of molecular genetics to refine prognosis in acute myeloid leukemia.

Authors:  Bhavana Bhatnagar; Ramiro Garzon
Journal:  Curr Hematol Malig Rep       Date:  2014-06       Impact factor: 3.952

Review 9.  Clinical exome sequencing in neurogenetic and neuropsychiatric disorders.

Authors:  Brent L Fogel; Hane Lee; Samuel P Strom; Joshua L Deignan; Stanley F Nelson
Journal:  Ann N Y Acad Sci       Date:  2015-08-06       Impact factor: 5.691

Review 10.  The neurogenetics of atypical parkinsonian disorders.

Authors:  Brent L Fogel; Mary C Clark; Daniel H Geschwind
Journal:  Semin Neurol       Date:  2014-06-25       Impact factor: 3.420

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