Literature DB >> 26250888

Clinical exome sequencing in neurogenetic and neuropsychiatric disorders.

Brent L Fogel1, Hane Lee2,3, Samuel P Strom2,3, Joshua L Deignan2,3, Stanley F Nelson2,3,4.   

Abstract

Exome sequencing has recently been elevated to the standard of care for genetic diagnostic testing, particularly for genetically diverse and clinically heterogeneous disorders. This review provides a clinically oriented discussion of the next-generation sequencing technology that makes exome sequencing possible and how such technology is applied to the diagnosis of Mendelian disease, including clinically significant de novo variation, interpretation of variants of uncertain clinical significance, the future potential for genetic assessments of disease risk, and the substantial benefits in diagnostic efficiency. Important caveats are also discussed, including the implications of incidental or secondary findings detected during exome sequencing and the relationship of exome sequencing to other methods of clinical genomic testing, such as chromosomal microarray and genome sequencing. Overall, the widespread adoption and use of exome sequencing in routine clinical practice is expected to improve diagnosis rates and reduce test costs, while leading to improvements in patient outcomes and a renewed emphasis on disease management.
© 2015 New York Academy of Sciences.

Entities:  

Keywords:  exome; genetic testing; genetics; genome; neurogenetics; sequencing

Mesh:

Year:  2015        PMID: 26250888      PMCID: PMC4744590          DOI: 10.1111/nyas.12850

Source DB:  PubMed          Journal:  Ann N Y Acad Sci        ISSN: 0077-8923            Impact factor:   5.691


  60 in total

1.  Polygenic risk for schizophrenia associated with working memory-related prefrontal brain activation in patients with schizophrenia and healthy controls.

Authors:  Karolina Kauppi; Lars T Westlye; Martin Tesli; Francesco Bettella; Christine L Brandt; Morten Mattingsdal; Torill Ueland; Thomas Espeseth; Ingrid Agartz; Ingrid Melle; Srdjan Djurovic; Ole A Andreassen
Journal:  Schizophr Bull       Date:  2014-11-11       Impact factor: 9.306

2.  Interpretation of genetic testing: variants of unknown significance.

Authors:  Brent L Fogel
Journal:  Continuum (Minneap Minn)       Date:  2011-04

3.  Performance of mutation pathogenicity prediction methods on missense variants.

Authors:  Janita Thusberg; Ayodeji Olatubosun; Mauno Vihinen
Journal:  Hum Mutat       Date:  2011-02-22       Impact factor: 4.878

4.  Exome sequencing in the clinical diagnosis of sporadic or familial cerebellar ataxia.

Authors:  Brent L Fogel; Hane Lee; Joshua L Deignan; Samuel P Strom; Sibel Kantarci; Xizhe Wang; Fabiola Quintero-Rivera; Eric Vilain; Wayne W Grody; Susan Perlman; Daniel H Geschwind; Stanley F Nelson
Journal:  JAMA Neurol       Date:  2014-10       Impact factor: 18.302

5.  Clinical whole exome sequencing in child neurology practice.

Authors:  Siddharth Srivastava; Julie S Cohen; Hilary Vernon; Kristin Barañano; Rebecca McClellan; Leila Jamal; SakkuBai Naidu; Ali Fatemi
Journal:  Ann Neurol       Date:  2014-08-30       Impact factor: 10.422

Review 6.  Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies.

Authors:  David T Miller; Margaret P Adam; Swaroop Aradhya; Leslie G Biesecker; Arthur R Brothman; Nigel P Carter; Deanna M Church; John A Crolla; Evan E Eichler; Charles J Epstein; W Andrew Faucett; Lars Feuk; Jan M Friedman; Ada Hamosh; Laird Jackson; Erin B Kaminsky; Klaas Kok; Ian D Krantz; Robert M Kuhn; Charles Lee; James M Ostell; Carla Rosenberg; Stephen W Scherer; Nancy B Spinner; Dimitri J Stavropoulos; James H Tepperberg; Erik C Thorland; Joris R Vermeesch; Darrel J Waggoner; Michael S Watson; Christa Lese Martin; David H Ledbetter
Journal:  Am J Hum Genet       Date:  2010-05-14       Impact factor: 11.025

7.  The usefulness of whole-exome sequencing in routine clinical practice.

Authors:  Alejandro Iglesias; Kwame Anyane-Yeboa; Julia Wynn; Ashley Wilson; Megan Truitt Cho; Edwin Guzman; Rebecca Sisson; Claire Egan; Wendy K Chung
Journal:  Genet Med       Date:  2014-06-05       Impact factor: 8.822

Review 8.  Solving the molecular diagnostic testing conundrum for Mendelian disorders in the era of next-generation sequencing: single-gene, gene panel, or exome/genome sequencing.

Authors:  Yuan Xue; Arunkanth Ankala; William R Wilcox; Madhuri R Hegde
Journal:  Genet Med       Date:  2014-09-18       Impact factor: 8.822

9.  Parental somatic mosaicism is underrecognized and influences recurrence risk of genomic disorders.

Authors:  Ian M Campbell; Bo Yuan; Caroline Robberecht; Rolph Pfundt; Przemyslaw Szafranski; Meriel E McEntagart; Sandesh C S Nagamani; Ayelet Erez; Magdalena Bartnik; Barbara Wiśniowiecka-Kowalnik; Katie S Plunkett; Amber N Pursley; Sung-Hae L Kang; Weimin Bi; Seema R Lalani; Carlos A Bacino; Mala Vast; Karen Marks; Michael Patton; Peter Olofsson; Ankita Patel; Joris A Veltman; Sau Wai Cheung; Chad A Shaw; Lisenka E L M Vissers; Joris R Vermeesch; James R Lupski; Paweł Stankiewicz
Journal:  Am J Hum Genet       Date:  2014-07-31       Impact factor: 11.025

10.  Assessing the necessity of confirmatory testing for exome-sequencing results in a clinical molecular diagnostic laboratory.

Authors:  Samuel P Strom; Hane Lee; Kingshuk Das; Eric Vilain; Stanley F Nelson; Wayne W Grody; Joshua L Deignan
Journal:  Genet Med       Date:  2014-01-09       Impact factor: 8.822

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  14 in total

Review 1.  Clinical exome sequencing in neurologic disease.

Authors:  Brent L Fogel; Saty Satya-Murti; Bruce H Cohen
Journal:  Neurol Clin Pract       Date:  2016-04

2.  Will New Genetic Techniques Like Exome Sequencing and Others Obviate the Need for Clinical Expertise? Yes.

Authors:  Vincenzo Bonifati
Journal:  Mov Disord Clin Pract       Date:  2016-10-17

3.  COQ4 Mutation Leads to Childhood-Onset Ataxia Improved by CoQ10 Administration.

Authors:  Ahmet Okay Caglayan; Hakan Gumus; Erin Sandford; Thomas L Kubisiak; Qianyi Ma; A Bilge Ozel; Huseyin Per; Jun Z Li; Vikram G Shakkottai; Margit Burmeister
Journal:  Cerebellum       Date:  2019-06       Impact factor: 3.847

4.  The need to develop a patient-centered precision medicine model for adults with chronic disability.

Authors:  Susan M Wolf; Bharat Thyagarajan; Brent L Fogel
Journal:  Expert Rev Mol Diagn       Date:  2017-04-03       Impact factor: 5.225

Review 5.  Clinical application of next-generation sequencing to the practice of neurology.

Authors:  Jessica Rexach; Hane Lee; Julian A Martinez-Agosto; Andrea H Németh; Brent L Fogel
Journal:  Lancet Neurol       Date:  2019-05       Impact factor: 44.182

6.  Presenting Patterns of Genetically Determined Developmental Encephalopathies With Epilepsy and Movement Disorders: A Single Tertiary Center Retrospective Cohort Study.

Authors:  Mario Mastrangelo; Serena Galosi; Serena Cesario; Alessia Renzi; Lucilla Campea; Vincenzo Leuzzi
Journal:  Front Neurol       Date:  2022-06-20       Impact factor: 4.086

7.  Absence of CFAP69 Causes Male Infertility due to Multiple Morphological Abnormalities of the Flagella in Human and Mouse.

Authors:  Frederick N Dong; Amir Amiri-Yekta; Guillaume Martinez; Antoine Saut; Julie Tek; Laurence Stouvenel; Patrick Lorès; Thomas Karaouzène; Nicolas Thierry-Mieg; Véronique Satre; Sophie Brouillet; Abbas Daneshipour; Seyedeh Hanieh Hosseini; Mélanie Bonhivers; Hamid Gourabi; Emmanuel Dulioust; Christophe Arnoult; Aminata Touré; Pierre F Ray; Haiqing Zhao; Charles Coutton
Journal:  Am J Hum Genet       Date:  2018-04-05       Impact factor: 11.025

Review 8.  Improving recommendations for genomic medicine: building an evolutionary process from clinical practice advisory documents to guidelines.

Authors:  Wylie Burke; Ellen Wright Clayton; Susan M Wolf; Susan A Berry; Barbara J Evans; James P Evans; Ralph Hall; Diane Korngiebel; Anne-Marie Laberge; Bonnie S LeRoy; Amy L McGuire
Journal:  Genet Med       Date:  2019-06-04       Impact factor: 8.822

9.  A diagnostic ceiling for exome sequencing in cerebellar ataxia and related neurological disorders.

Authors:  Kathie J Ngo; Jessica E Rexach; Hane Lee; Lauren E Petty; Susan Perlman; Juliana M Valera; Joshua L Deignan; Yuanming Mao; Mamdouh Aker; Jennifer E Posey; Shalini N Jhangiani; Zeynep H Coban-Akdemir; Eric Boerwinkle; Donna Muzny; Alexandra B Nelson; Sharon Hassin-Baer; Gemma Poke; Katherine Neas; Michael D Geschwind; Wayne W Grody; Richard Gibbs; Daniel H Geschwind; James R Lupski; Jennifer E Below; Stanley F Nelson; Brent L Fogel
Journal:  Hum Mutat       Date:  2019-11-25       Impact factor: 4.700

Review 10.  The role of gene variants in the pathogenesis of neurodegenerative disorders as revealed by next generation sequencing studies: a review.

Authors:  Shirley Yin-Yu Pang; Kay-Cheong Teo; Jacob Shujui Hsu; Richard Shek-Kwan Chang; Miaoxin Li; Pak-Chung Sham; Shu-Leong Ho
Journal:  Transl Neurodegener       Date:  2017-10-06       Impact factor: 8.014

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