Literature DB >> 24187131

The structure of integrin α1I domain in complex with a collagen-mimetic peptide.

Yanni K-Y Chin1, Stephen J Headey, Biswaranjan Mohanty, Rahul Patil, Paul A McEwan, James D Swarbrick, Terrence D Mulhern, Jonas Emsley, Jamie S Simpson, Martin J Scanlon.   

Abstract

We have determined the structure of the human integrin α1I domain bound to a triple-helical collagen peptide. The structure of the α1I-peptide complex was investigated using data from NMR, small angle x-ray scattering, and size exclusion chromatography that were used to generate and validate a model of the complex using the data-driven docking program, HADDOCK (High Ambiguity Driven Biomolecular Docking). The structure revealed that the α1I domain undergoes a major conformational change upon binding of the collagen peptide. This involves a large movement in the C-terminal helix of the αI domain that has been suggested to be the mechanism by which signals are propagated in the intact integrin receptor. The structure suggests a basis for the different binding selectivity observed for the α1I and α2I domains. Mutational data identify residues that contribute to the conformational change observed. Furthermore, small angle x-ray scattering data suggest that at low collagen peptide concentrations the complex exists in equilibrium between a 1:1 and 2:1 α1I-peptide complex.

Entities:  

Keywords:  Collagen; Extracellular Matrix; Integrins; NMR; Protein Structure; Protein-Protein Interactions

Mesh:

Substances:

Year:  2013        PMID: 24187131      PMCID: PMC3873540          DOI: 10.1074/jbc.M113.480251

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  53 in total

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2.  Structural basis of collagen recognition by integrin alpha2beta1.

Authors:  J Emsley; C G Knight; R W Farndale; M J Barnes; R C Liddington
Journal:  Cell       Date:  2000-03-31       Impact factor: 41.582

3.  HYDRONMR: prediction of NMR relaxation of globular proteins from atomic-level structures and hydrodynamic calculations.

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4.  Distinct recognition of collagen subtypes by alpha(1)beta(1) and alpha(2)beta(1) integrins. Alpha(1)beta(1) mediates cell adhesion to type XIII collagen.

Authors:  P Nykvist; H Tu; J Ivaska; J Käpylä; T Pihlajaniemi; J Heino
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5.  Structure of collagen receptor integrin α(1)I domain carrying the activating mutation E317A.

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6.  Publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution.

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7.  Enhancing integrin α1 inserted (I) domain affinity to ligand potentiates integrin α1β1-mediated down-regulation of collagen synthesis.

Authors:  Mingjian Shi; Vadim Pedchenko; Briana H Greer; Wade D Van Horn; Samuel A Santoro; Charles R Sanders; Billy G Hudson; Brandt F Eichman; Roy Zent; Ambra Pozzi
Journal:  J Biol Chem       Date:  2012-08-10       Impact factor: 5.157

8.  The collagen-binding A-domains of integrins alpha(1)beta(1) and alpha(2)beta(1) recognize the same specific amino acid sequence, GFOGER, in native (triple-helical) collagens.

Authors:  C G Knight; L F Morton; A R Peachey; D S Tuckwell; R W Farndale; M J Barnes
Journal:  J Biol Chem       Date:  2000-01-07       Impact factor: 5.157

9.  Dynamic structural changes are observed upon collagen and metal ion binding to the integrin α1 I domain.

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Journal:  J Biol Chem       Date:  2012-07-30       Impact factor: 5.157

10.  Assignments of human integrin α1I domain in the apo and Mg²⁺ bound states.

Authors:  Yanni K-Y Chin; Stephen Headey; Biswaranjan Mohanty; Jonas Emsley; Jamie S Simpson; Martin J Scanlon
Journal:  Biomol NMR Assign       Date:  2013-01-22       Impact factor: 0.746

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  9 in total

1.  Evidence for α-helices in the large intracellular domain mediating modulation of the α1-glycine receptor by ethanol and Gβγ.

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Journal:  J Pharmacol Exp Ther       Date:  2014-10-22       Impact factor: 4.030

2.  A pivotal role for a conserved bulky residue at the α1-helix of the αI integrin domain in ligand binding.

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Journal:  J Biol Chem       Date:  2017-10-27       Impact factor: 5.157

3.  Proline hydroxylation in collagen supports integrin binding by two distinct mechanisms.

Authors:  Kalle H Sipilä; Kati Drushinin; Pekka Rappu; Johanna Jokinen; Tiina A Salminen; Antti M Salo; Jarmo Käpylä; Johanna Myllyharju; Jyrki Heino
Journal:  J Biol Chem       Date:  2018-04-03       Impact factor: 5.157

4.  Magnesium Activates Microsecond Dynamics to Regulate Integrin-Collagen Recognition.

Authors:  Ana Monica Nunes; Conceição A S A Minetti; David P Remeta; Jean Baum
Journal:  Structure       Date:  2018-06-21       Impact factor: 5.006

5.  Early chordate origin of the vertebrate integrin αI domains.

Authors:  Bhanupratap Singh Chouhan; Jarmo Käpylä; Konstantin Denessiouk; Alexander Denesyuk; Jyrki Heino; Mark S Johnson
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6.  Salt-bridge modulates differential calcium-mediated ligand binding to integrin α1- and α2-I domains.

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Review 7.  Role of prolyl hydroxylation in the molecular interactions of collagens.

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9.  Unique charge-dependent constraint on collagen recognition by integrin α10β1.

Authors:  Samir W Hamaia; Daisy Luff; Emma J Hunter; Jean-Daniel Malcor; Dominique Bihan; Donald Gullberg; Richard W Farndale
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  9 in total

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