Literature DB >> 22847004

Dynamic structural changes are observed upon collagen and metal ion binding to the integrin α1 I domain.

Paul H Weinreb1, Sheng Li, Sharon X Gao, Tong Liu, R Blake Pepinsky, Justin A Caravella, Jun H Lee, Virgil L Woods.   

Abstract

We have applied hydrogen-deuterium exchange mass spectrometry, in conjunction with differential scanning calorimetry and protein stability analysis, to examine solution dynamics of the integrin α1 I domain induced by the binding of divalent cations, full-length type IV collagen, or a function-blocking monoclonal antibody. These studies revealed features of integrin activation and α1I-ligand complexes that were not detected by static crystallographic data. Mg(2+) and Mn(2+) stabilized α1I but differed in their effects on exchange rates in the αC helix. Ca(2+) impacted α1I conformational dynamics without altering its gross thermal stability. Interaction with collagen affected the exchange rates in just one of three metal ion-dependent adhesion site (MIDAS) loops, suggesting that MIDAS loop 2 plays a primary role in mediating ligand binding. Collagen also induced changes consistent with increased unfolding in both the αC and allosteric C-terminal helices of α1I. The antibody AQC2, which binds to α1I in a ligand-mimetic manner, also reduced exchange in MIDAS loop 2 and increased exchange in αC, but it did not impact the C-terminal region. This is the first study to directly demonstrate the conformational changes induced upon binding of an integrin I domain to a full-length collagen ligand, and it demonstrates the utility of the deuterium exchange mass spectrometry method to study the solution dynamics of integrin/ligand and integrin/metal ion interactions. Based on the ligand and metal ion binding data, we propose a model for collagen-binding integrin activation that explains the differing abilities of Mg(2+), Mn(2+), and Ca(2+) to activate I domain-containing integrins.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22847004      PMCID: PMC3463359          DOI: 10.1074/jbc.M112.354365

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  75 in total

1.  Interaction between collagen and the alpha(2) I-domain of integrin alpha(2)beta(1). Critical role of conserved residues in the metal ion-dependent adhesion site (MIDAS) region.

Authors:  T Kamata; R C Liddington; Y Takada
Journal:  J Biol Chem       Date:  1999-11-05       Impact factor: 5.157

Review 2.  Structural basis of integrin regulation and signaling.

Authors:  Bing-Hao Luo; Christopher V Carman; Timothy A Springer
Journal:  Annu Rev Immunol       Date:  2007       Impact factor: 28.527

Review 3.  Structural basis for ligand recognition by integrins.

Authors:  Junichi Takagi
Journal:  Curr Opin Cell Biol       Date:  2007-10-17       Impact factor: 8.382

4.  Epitope mapping by amide hydrogen/deuterium exchange coupled with immobilization of antibody, on-line proteolysis, liquid chromatography and mass spectrometry.

Authors:  Stephen J Coales; Steven J Tuske; Justine C Tomasso; Yoshitomo Hamuro
Journal:  Rapid Commun Mass Spectrom       Date:  2009-03       Impact factor: 2.419

5.  Competitive interactions of collagen and a jararhagin-derived disintegrin peptide with the integrin alpha2-I domain.

Authors:  Lester J Lambert; Andrey A Bobkov; Jeffrey W Smith; Francesca M Marassi
Journal:  J Biol Chem       Date:  2008-04-16       Impact factor: 5.157

6.  An unusual allosteric mobility of the C-terminal helix of a high-affinity alphaL integrin I domain variant bound to ICAM-5.

Authors:  Hongmin Zhang; Jose M Casasnovas; Moonsoo Jin; Jin-huan Liu; Carl G Gahmberg; Timothy A Springer; Jia-huai Wang
Journal:  Mol Cell       Date:  2008-08-08       Impact factor: 17.970

7.  Calcium binding rigidifies the C2 domain and the intradomain interaction of GIVA phospholipase A2 as revealed by hydrogen/deuterium exchange mass spectrometry.

Authors:  Yuan-Hao Hsu; John E Burke; Daren L Stephens; Raymond A Deems; Sheng Li; Kyle M Asmus; Virgil L Woods; Edward A Dennis
Journal:  J Biol Chem       Date:  2008-01-21       Impact factor: 5.157

Review 8.  Protein structure and dynamics studied by mass spectrometry: H/D exchange, hydroxyl radical labeling, and related approaches.

Authors:  Lars Konermann; Xin Tong; Yan Pan
Journal:  J Mass Spectrom       Date:  2008-08       Impact factor: 1.982

9.  Very late antigen 1 blockade markedly promotes survival of corneal allografts.

Authors:  Lu Chen; Syed Huq; Humphrey Gardner; Antonin R de Fougerolles; Stefano Barabino; M Reza Dana
Journal:  Arch Ophthalmol       Date:  2007-06

10.  A phospholipid substrate molecule residing in the membrane surface mediates opening of the lid region in group IVA cytosolic phospholipase A2.

Authors:  John E Burke; Yuan-Hao Hsu; Raymond A Deems; Sheng Li; Virgil L Woods; Edward A Dennis
Journal:  J Biol Chem       Date:  2008-08-27       Impact factor: 5.157

View more
  10 in total

1.  The structure of integrin α1I domain in complex with a collagen-mimetic peptide.

Authors:  Yanni K-Y Chin; Stephen J Headey; Biswaranjan Mohanty; Rahul Patil; Paul A McEwan; James D Swarbrick; Terrence D Mulhern; Jonas Emsley; Jamie S Simpson; Martin J Scanlon
Journal:  J Biol Chem       Date:  2013-11-01       Impact factor: 5.157

2.  Measurement of cationic and intracellular modulation of integrin binding affinity by AFM-based nanorobot.

Authors:  Kevin C Patterson; Ruiguo Yang; Bixi Zeng; Bo Song; Shouye Wang; Ning Xi; Marc D Basson
Journal:  Biophys J       Date:  2013-07-02       Impact factor: 4.033

3.  Epitope-distal effects accompany the binding of two distinct antibodies to hepatitis B virus capsids.

Authors:  Jessica Z Bereszczak; Rebecca J Rose; Esther van Duijn; Norman R Watts; Paul T Wingfield; Alasdair C Steven; Albert J R Heck
Journal:  J Am Chem Soc       Date:  2013-04-18       Impact factor: 15.419

4.  Magnesium Activates Microsecond Dynamics to Regulate Integrin-Collagen Recognition.

Authors:  Ana Monica Nunes; Conceição A S A Minetti; David P Remeta; Jean Baum
Journal:  Structure       Date:  2018-06-21       Impact factor: 5.006

5.  Integrated strategy reveals the protein interface between cancer targets Bcl-2 and NAF-1.

Authors:  Sagi Tamir; Shahar Rotem-Bamberger; Chen Katz; Faruck Morcos; Kendra L Hailey; John A Zuris; Charles Wang; Andrea R Conlan; Colin H Lipper; Mark L Paddock; Ron Mittler; José N Onuchic; Patricia A Jennings; Assaf Friedler; Rachel Nechushtai
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-25       Impact factor: 11.205

Review 6.  Applications of hydrogen/deuterium exchange MS from 2012 to 2014.

Authors:  Gregory F Pirrone; Roxana E Iacob; John R Engen
Journal:  Anal Chem       Date:  2014-11-14       Impact factor: 6.986

7.  Salt-bridge modulates differential calcium-mediated ligand binding to integrin α1- and α2-I domains.

Authors:  Kyle L Brown; Surajit Banerjee; Andrew Feigley; Hanna Abe; Timothy S Blackwell; Ambra Pozzi; Billy G Hudson; Roy Zent
Journal:  Sci Rep       Date:  2018-02-13       Impact factor: 4.379

8.  Integrin Activation Contributes to Lower Cisplatin Sensitivity in MV3 Melanoma Cells by Inducing the Wnt Signalling Pathway.

Authors:  Maria B R Piva; Bastian Jakubzig; Gerd Bendas
Journal:  Cancers (Basel)       Date:  2017-09-16       Impact factor: 6.639

9.  Intrinsic local destabilization of the C-terminus predisposes integrin α1 I domain to a conformational switch induced by collagen binding.

Authors:  Ana Monica Nunes; Jie Zhu; Jacqueline Jezioro; Conceição A S A Minetti; David P Remeta; Richard W Farndale; Samir W Hamaia; Jean Baum
Journal:  Protein Sci       Date:  2016-08-01       Impact factor: 6.725

10.  QUDeX-MS: hydrogen/deuterium exchange calculation for mass spectra with resolved isotopic fine structure.

Authors:  Joseph P Salisbury; Qian Liu; Jeffrey N Agar
Journal:  BMC Bioinformatics       Date:  2014-12-11       Impact factor: 3.169

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.