Literature DB >> 24186071

CpG island chromatin is shaped by recruitment of ZF-CxxC proteins.

Neil P Blackledge1, John P Thomson, Peter J Skene.   

Abstract

Most mammalian gene promoters are embedded within genomic regions called CpG islands, characterized by elevated levels of nonmethylated CpG dinucleotides. Here, we describe recent work demonstrating that CpG islands act as specific nucleation sites for the zinc finger CxxC domain-containing proteins CFP1 and KDM2A. Importantly, both CFP1 and KDM2A are associated with enzymatic activities that modulate specific histone lysine methylation marks. The action of these zinc finger CxxC domain proteins therefore imposes a defined chromatin architecture on CpG islands that distinguishes these important regulatory elements from the surrounding genome. The functional consequence of this CpG island-directed chromatin environment is discussed.

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Year:  2013        PMID: 24186071      PMCID: PMC3809580          DOI: 10.1101/cshperspect.a018648

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  8 in total

1.  Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters.

Authors:  Leighton J Core; Joshua J Waterfall; John T Lis
Journal:  Science       Date:  2008-12-04       Impact factor: 47.728

2.  Cloning of a mammalian transcriptional activator that binds unmethylated CpG motifs and shares a CXXC domain with DNA methyltransferase, human trithorax, and methyl-CpG binding domain protein 1.

Authors:  K S Voo; D L Carlone; B M Jacobsen; A Flodin; D G Skalnik
Journal:  Mol Cell Biol       Date:  2000-03       Impact factor: 4.272

3.  Epigenetic control of immunity.

Authors:  Meinrad Busslinger; Alexander Tarakhovsky
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-06-02       Impact factor: 10.005

Review 4.  DNA methylation in mammals.

Authors:  En Li; Yi Zhang
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-05-01       Impact factor: 10.005

5.  A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling.

Authors:  Vladimir R Ramirez-Carrozzi; Daniel Braas; Dev M Bhatt; Christine S Cheng; Christine Hong; Kevin R Doty; Joshua C Black; Alexander Hoffmann; Michael Carey; Stephen T Smale
Journal:  Cell       Date:  2009-07-10       Impact factor: 41.582

Review 6.  Structural and functional coordination of DNA and histone methylation.

Authors:  Xiaodong Cheng
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-08-01       Impact factor: 10.005

7.  CpG islands influence chromatin structure via the CpG-binding protein Cfp1.

Authors:  John P Thomson; Peter J Skene; Jim Selfridge; Thomas Clouaire; Jacky Guy; Shaun Webb; Alastair R W Kerr; Aimée Deaton; Rob Andrews; Keith D James; Daniel J Turner; Robert Illingworth; Adrian Bird
Journal:  Nature       Date:  2010-04-15       Impact factor: 49.962

8.  CpG islands recruit a histone H3 lysine 36 demethylase.

Authors:  Neil P Blackledge; Jin C Zhou; Michael Y Tolstorukov; Anca M Farcas; Peter J Park; Robert J Klose
Journal:  Mol Cell       Date:  2010-04-23       Impact factor: 17.970

  8 in total
  17 in total

Review 1.  Expanding the epigenetic landscape: novel modifications of cytosine in genomic DNA.

Authors:  Skirmantas Kriaucionis; Mamta Tahiliani
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-10-01       Impact factor: 10.005

Review 2.  DNA methylation in mammals.

Authors:  En Li; Yi Zhang
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-05-01       Impact factor: 10.005

3.  CpG-binding protein CFP1 promotes ovarian cancer cell proliferation by regulating BST2 transcription.

Authors:  Liu-Qing Yang; Han-Yin Hu; Yao Han; Ze-Yi Tang; Jie Gao; Qi-Yin Zhou; Yi-Xuan Liu; Hao-Sa Chen; Tu-Nan Xu; Lei Ao; Ying Xu; Xuan Che; Ya-Bo Jiang; Chun-Wei Xu; Xian-Chao Zhang; Yu-Xin Jiang; Michal Heger; Xiao-Min Wang; Shu-Qun Cheng; Wei-Wei Pan
Journal:  Cancer Gene Ther       Date:  2022-07-21       Impact factor: 5.854

Review 4.  Structural and functional coordination of DNA and histone methylation.

Authors:  Xiaodong Cheng
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-08-01       Impact factor: 10.005

5.  ZFP57 recognizes multiple and closely spaced sequence motif variants to maintain repressive epigenetic marks in mouse embryonic stem cells.

Authors:  Zahra Anvar; Marco Cammisa; Vincenzo Riso; Ilaria Baglivo; Harpreet Kukreja; Angela Sparago; Michael Girardot; Shraddha Lad; Italia De Feis; Flavia Cerrato; Claudia Angelini; Robert Feil; Paolo V Pedone; Giovanna Grimaldi; Andrea Riccio
Journal:  Nucleic Acids Res       Date:  2015-10-19       Impact factor: 16.971

Review 6.  Repeat-mediated epigenetic dysregulation of the FMR1 gene in the fragile X-related disorders.

Authors:  Karen Usdin; Daman Kumari
Journal:  Front Genet       Date:  2015-06-03       Impact factor: 4.599

7.  The CpG-sites of the CBX3 ubiquitous chromatin opening element are critical structural determinants for the anti-silencing function.

Authors:  Jessica Kunkiel; Natascha Gödecke; Mania Ackermann; Dirk Hoffmann; Axel Schambach; Nico Lachmann; Dagmar Wirth; Thomas Moritz
Journal:  Sci Rep       Date:  2017-08-11       Impact factor: 4.379

8.  Identification and analysis of key genes in osteosarcoma using bioinformatics.

Authors:  Chunyu Diao; Yong Xi; Tao Xiao
Journal:  Oncol Lett       Date:  2017-12-19       Impact factor: 2.967

9.  Epigenetic regulator CXXC5 recruits DNA demethylase Tet2 to regulate TLR7/9-elicited IFN response in pDCs.

Authors:  Shixin Ma; Xiaoling Wan; Zihou Deng; Lei Shi; Congfang Hao; Zhenyuan Zhou; Chun Zhou; Yiyuan Fang; Jinghua Liu; Jing Yang; Xia Chen; Tiantian Li; Aiping Zang; Shigang Yin; Bin Li; Joel Plumas; Laurence Chaperot; Xiaoming Zhang; Guoliang Xu; Lubin Jiang; Nan Shen; Sidong Xiong; Xiaoming Gao; Yan Zhang; Hui Xiao
Journal:  J Exp Med       Date:  2017-04-17       Impact factor: 14.307

10.  Merging data from genetic and epigenetic approaches to better understand autistic spectrum disorder.

Authors:  Dennis R Grayson; Alessandro Guidotti
Journal:  Epigenomics       Date:  2015-11-09       Impact factor: 4.778

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