Literature DB >> 24174444

In transition: primate genomics at a time of rapid change.

Jeffrey Rogers.   

Abstract

The field of nonhuman primate genomics is undergoing rapid change and making impressive progress. Exploiting new technologies for DNA sequencing, researchers have generated new whole-genome sequence assemblies for multiple primate species over the past 6 years. In addition, investigations of within-species genetic variation, gene expression and RNA sequences, conservation of non-protein-coding regions of the genome, and other aspects of comparative genomics are moving at an accelerating speed. This progress is opening a wide array of new research opportunities in the analysis of comparative primate genome content and evolution. It also creates new possibilities for the use of nonhuman primates as model organisms in biomedical research. This transition, based on both new technology and the new information being generated in regard to human genetics, provides an important justification for reevaluating the research goals, strategies, and study designs used in primate genetics and genomics.

Entities:  

Keywords:  annotation; genetic models of disease; genetic variation; genome assembly; primate

Mesh:

Year:  2013        PMID: 24174444      PMCID: PMC3814394          DOI: 10.1093/ilar/ilt042

Source DB:  PubMed          Journal:  ILAR J        ISSN: 1084-2020


  57 in total

Review 1.  Evolution at two levels in humans and chimpanzees.

Authors:  M C King; A C Wilson
Journal:  Science       Date:  1975-04-11       Impact factor: 47.728

2.  Majority of divergence between closely related DNA samples is due to indels.

Authors:  Roy J Britten; Lee Rowen; John Williams; R Andrew Cameron
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-02       Impact factor: 11.205

3.  Initial sequence of the chimpanzee genome and comparison with the human genome.

Authors: 
Journal:  Nature       Date:  2005-09-01       Impact factor: 49.962

4.  CRHR1 genotypes, neural circuits and the diathesis for anxiety and depression.

Authors:  J Rogers; M Raveendran; G L Fawcett; A S Fox; S E Shelton; J A Oler; J Cheverud; D M Muzny; R A Gibbs; R J Davidson; N H Kalin
Journal:  Mol Psychiatry       Date:  2012-11-13       Impact factor: 15.992

5.  Genome-wide scan of resistin mRNA expression in omental adipose tissue of baboons.

Authors:  M E Tejero; S A Cole; G Cai; K W Peebles; J H Freeland-Graves; L A Cox; M C Mahaney; J Rogers; J L VandeBerg; J Blangero; A G Comuzzie
Journal:  Int J Obes (Lond)       Date:  2005-04       Impact factor: 5.095

Review 6.  The utility of the non-human primate; model for studying gene by environment interactions in behavioral research.

Authors:  C S Barr; T K Newman; M L Becker; C C Parker; M Champoux; K P Lesch; D Goldman; S J Suomi; J D Higley
Journal:  Genes Brain Behav       Date:  2003-12       Impact factor: 3.449

7.  Rearing condition and rh5-HTTLPR interact to influence limbic-hypothalamic-pituitary-adrenal axis response to stress in infant macaques.

Authors:  Christina S Barr; Timothy K Newman; Courtney Shannon; Clarissa Parker; Rachel L Dvoskin; Michelle L Becker; Melanie Schwandt; Maribeth Champoux; Klaus Peter Lesch; David Goldman; Stephen J Suomi; J Dee Higley
Journal:  Biol Psychiatry       Date:  2004-04-01       Impact factor: 13.382

8.  Differential microRNA response to a high-cholesterol, high-fat diet in livers of low and high LDL-C baboons.

Authors:  Genesio M Karere; Jeremy P Glenn; John L VandeBerg; Laura A Cox
Journal:  BMC Genomics       Date:  2012-07-18       Impact factor: 3.969

9.  Whole-genome sequencing and analysis of the Malaysian cynomolgus macaque (Macaca fascicularis) genome.

Authors:  Atsunori Higashino; Ryuichi Sakate; Yosuke Kameoka; Ichiro Takahashi; Makoto Hirata; Reiko Tanuma; Tohru Masui; Yasuhiro Yasutomi; Naoki Osada
Journal:  Genome Biol       Date:  2012-07-02       Impact factor: 13.583

10.  The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics.

Authors:  Lenore Pipes; Sheng Li; Marjan Bozinoski; Robert Palermo; Xinxia Peng; Phillip Blood; Sara Kelly; Jeffrey M Weiss; Jean Thierry-Mieg; Danielle Thierry-Mieg; Paul Zumbo; Ronghua Chen; Gary P Schroth; Christopher E Mason; Michael G Katze
Journal:  Nucleic Acids Res       Date:  2012-11-29       Impact factor: 16.971

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  5 in total

1.  Progress in genetics and genomics of nonhuman primates. Introduction.

Authors:  John D Harding
Journal:  ILAR J       Date:  2013

Review 2.  Genomic Tools for the Use of Nonhuman Primates in Translational Research.

Authors:  John D Harding
Journal:  ILAR J       Date:  2017-07-01

3.  The evolution of S100A7 in primates: a model of concerted and birth-and-death evolution.

Authors:  Ana Águeda-Pinto; Pedro José Esteves
Journal:  Immunogenetics       Date:  2018-08-29       Impact factor: 2.846

4.  Dopamine pathway is highly diverged in primate species that differ markedly in social behavior.

Authors:  Christina M Bergey; Jane E Phillips-Conroy; Todd R Disotell; Clifford J Jolly
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-02       Impact factor: 11.205

Review 5.  Dark Matter of Primate Genomes: Satellite DNA Repeats and Their Evolutionary Dynamics.

Authors:  Syed Farhan Ahmad; Worapong Singchat; Maryam Jehangir; Aorarat Suntronpong; Thitipong Panthum; Suchinda Malaivijitnond; Kornsorn Srikulnath
Journal:  Cells       Date:  2020-12-18       Impact factor: 6.600

  5 in total

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