Literature DB >> 30159709

The evolution of S100A7 in primates: a model of concerted and birth-and-death evolution.

Ana Águeda-Pinto1,2, Pedro José Esteves3,4,5.   

Abstract

The human S100A7 resides in the epidermal differentiation complex (EDC) and has been described as a key effector of innate immunity. In humans, there are five S100A7 genes located in tandem-S100A7A, S100A7P1, S100AL2, S100A7, and S100AP2. The presence of several retroelements in the S100A7A/S100A7P1 and S100A7/S100A7P2 clusters suggests that these genes were originated from a duplication around ~ 35 million years ago, during or after the divergence of Platyrrhini and Catarrhini primates. To test this hypothesis, and taking advantage of the high number of genomic sequences available in the public databases, we retrieved S100A7 gene sequences of 12 primates belonging to the Cercopithecoidea and Hominoidea (Catarrhini species). Our results support the duplication theory, with at least one gene of each cluster being identified in both Cercopithecoidea and Hominoidea species. Moreover, given the presence of an ongoing gene conversion event between S100A7 and S100A7A, a high rate of mutation in S100A7L2 and the presence of pseudogenes, we proposed a model of concerted and birth-and-death evolution to explain the evolution of S100A7 gene family. Indeed, our results suggest that S100A7L2 most likely suffered a neofunctionalization in the Catarrhini group. Being S100A7 a major protein in innate defense, we believe that our findings could open new doors in the study of this gene family in immune system.

Entities:  

Keywords:  Model of concerted and birth-and-death evolution; Primates; S100A7 (psoriasin)

Mesh:

Substances:

Year:  2018        PMID: 30159709     DOI: 10.1007/s00251-018-1079-x

Source DB:  PubMed          Journal:  Immunogenetics        ISSN: 0093-7711            Impact factor:   2.846


  42 in total

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Authors:  Masatoshi Nei; Alejandro P Rooney
Journal:  Annu Rev Genet       Date:  2005       Impact factor: 16.830

2.  Neofunctionalization of duplicated genes under the pressure of gene conversion.

Authors:  Kosuke M Teshima; Hideki Innan
Journal:  Genetics       Date:  2008-02-01       Impact factor: 4.562

Review 3.  Calcium-dependent and -independent interactions of the S100 protein family.

Authors:  Liliana Santamaria-Kisiel; Anne C Rintala-Dempsey; Gary S Shaw
Journal:  Biochem J       Date:  2006-06-01       Impact factor: 3.857

4.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

Authors:  Sudhir Kumar; Glen Stecher; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2016-03-22       Impact factor: 16.240

5.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Authors:  J D Thompson; D G Higgins; T J Gibson
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

6.  Six S100 genes are clustered on human chromosome 1q21: identification of two genes coding for the two previously unreported calcium-binding proteins S100D and S100E.

Authors:  D Engelkamp; B W Schäfer; M G Mattei; P Erne; C W Heizmann
Journal:  Proc Natl Acad Sci U S A       Date:  1993-07-15       Impact factor: 11.205

7.  The mouse S100A15 ortholog parallels genomic organization, structure, gene expression, and protein-processing pattern of the human S100A7/A15 subfamily during epidermal maturation.

Authors:  Ronald Wolf; Christopher J Voscopoulos; Peter C FitzGerald; Paul Goldsmith; Christophe Cataisson; Michele Gunsior; Markus Walz; Thomas Ruzicka; Stuart H Yuspa
Journal:  J Invest Dermatol       Date:  2006-03-09       Impact factor: 8.551

Review 8.  Gene duplication as a major force in evolution.

Authors:  Santoshkumar Magadum; Urbi Banerjee; Priyadharshini Murugan; Doddabhimappa Gangapur; Rajasekar Ravikesavan
Journal:  J Genet       Date:  2013-04       Impact factor: 1.166

9.  Psoriasin (S100A7) is a novel biomarker for lung squamous cell carcinoma in humans.

Authors:  Guijuan Liu; Qiang Wu; Guilan Liu; Xueying Song; Jihong Zhang
Journal:  Cancer Cell Int       Date:  2015-02-12       Impact factor: 5.722

10.  Long-read sequence assembly of the gorilla genome.

Authors:  David Gordon; John Huddleston; Mark J P Chaisson; Christopher M Hill; Zev N Kronenberg; Katherine M Munson; Maika Malig; Archana Raja; Ian Fiddes; LaDeana W Hillier; Christopher Dunn; Carl Baker; Joel Armstrong; Mark Diekhans; Benedict Paten; Jay Shendure; Richard K Wilson; David Haussler; Chen-Shan Chin; Evan E Eichler
Journal:  Science       Date:  2016-04-01       Impact factor: 47.728

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  1 in total

1.  S100A7/Ran-binding protein 9 coevolution in mammals.

Authors:  Fabio D'Amico; Francesca Nadalin; Massimo Libra
Journal:  Immunogenetics       Date:  2020-02-10       Impact factor: 2.846

  1 in total

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