| Literature DB >> 24167600 |
Frank Becker1, Kerstin Junker, Martin Parr, Arndt Hartmann, Susanne Füssel, Marieta Toma, Rainer Grobholz, Thomas Pflugmann, Bernd Wullich, Arne Strauss, Carl Ludwig Behnes, Wolfgang Otto, Michael Stöckle, Volker Jung.
Abstract
Collecting duct carcinoma (CDC) is a rare renal neoplasm that is associated with poor prognosis due to its highly aggressive course and limited response to immuno- or chemotherapy. Histologically, CDC is defined as a subtype of renal cell carcinomas, but in some cases, it is difficult to differentiate from urothelial carcinomas (UC). Therefore the aim of this study was to determine genetic alterations of CDC in comparison to that of urothelial carcinomas of the upper urinary tract (UUT-UC) to clarify the histological origin of this rare tumor entity. Twenty-nine CDC samples were obtained from seven different German centers and compared with twenty-six urothelial carcinomas of the upper urinary tract. Comparative genomic hybridization (CGH) was used to investigate the genetic composition of patients' tumors and allowed the detection of losses and gains of DNA copy numbers throughout the entire genome. The clinical data were correlated with CGH results. CGH analysis of CDC revealed DNA aberrations in many chromosomes. DNA losses were more frequently observed than gains, while high-level amplifications were not detected. The mean frequency of CDC chromosomal aberrations (4.9/case) was slightly lower than that in UUT-UC (5.4/case). Recurrent CDC DNA losses occurred at 8p (n=9/29), 16p (9/29), 1p (n=7/29) and 9p (n=7/29), and gains occurred in 13q (n=9/29). In contrast to CDC, the most frequently detected UUT-UC DNA aberration was a loss at 9q (n=13/26). DNA losses at 9q, 13q and 8q as well as gains at 8p showed significant variations in UUT-UC compared to CDC. There was no correlation between the patients' clinical course and the presence or absence of these recurrent genetic alterations. CDCs are characterized by a different genetic pattern compared to UUT-UC. Regarding the published data on renal cell carcinoma, we conclude that CDC appears to be a unique entity among kidney carcinomas.Entities:
Mesh:
Year: 2013 PMID: 24167600 PMCID: PMC3805592 DOI: 10.1371/journal.pone.0078137
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Characteristics and clinical data of patients with CDC and UUT-UC.
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| (n=29) | (%) |
| (n=26) | (%) | ||
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| male | 19 | (65.5) | male | 14 | (53.8) | |
| female | 10 | (34.5) | female | 12 | (46.2) | ||
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| mean | 66.3 | mean | 68.8 | |||
| range | 43-87 | Range | 22-88 | ||||
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| pT1a | 2 | (6.9) | pTa | 14 | (53.8) | |
| pT1b | 3 | (10.3) | pT1 | 2 | (7.7) | ||
| pT2 | 2 | (6.9) | pT2 | 6 | (23.1) | ||
| pT3a | 13 | (44.8) | pT3 | 4 | (15.4) | ||
| pT3b | 5 | (17.3) | pT4 | - | - | ||
| pT4 | 4 | (13.8) | |||||
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| G II | 2 | (6.9) | G1 | 4 | (15.4) | |
| G III | 23 | (79.3) | G2 | 13 | (50.0) | ||
| G IV | 4 | (13.8) | G3 | 9 | (34.6) | ||
CGH results of Collecting duct carcinomas (CDC): in detail.
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| DB3463II | 1a | Y | 1 | 0 | 1 | |||
| DB01/11451 | 1a | 10q24q26,16p13,20p13 | 6q11q14 | 3 | 1 | 4 | ||
| DB00/23723 | 1b | 10q24q26, 11q23q25, 12q24, 14q31q32, 15q24q26,16,17p13 | 2q21q32, 4q, 5q14q31, 6q11q16, 12q15, 13q14q21 | 7 | 6 | 13 | ||
| U6437/03 | 1b | 9 | 3q24,13q22q24 | 1 | 2 | 3 | ||
| DB08/24085 | 1b | 8p21p23,12q24,16p11p12,20q12q13 | 4q12q28, 5q13q21 | 4 | 2 | 6 | ||
| 25806 C2 | 2 | 3q32q34 | - | 1 | 0 | 1 | ||
| P16229/08 | 2 | 9p | - | 1 | 0 | 1 | ||
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| DB08/28952 | 3a | 10p11p12,20 | 12q14q21,13q14q21 | 2 | 2 | 4 | ||
| H12747 | 3a | 1p36, 1q42q44, 2p23p25, 4p16, 5p15, 6p22p25, 8p22p23, 11p15, 11q25, 12p13, 13q34, 14q32, 15q,16p,17p13, 21 | 6q11q14 | 16 | 1 | 17 | ||
| H15127 | 3a | 8p, 10q | 1q41q44 | 2 | 1 | 3 | ||
| 18603-08 | 3a | 8p22p23, 9p21, 10q23q26 | 4q12q21, 13q21 | 3 | 2 | 5 | ||
| P10834/00 | 3a | 6p22p25, 6q25q27, 7p21, 8p21p23, 10q23q26,11q23q25 | - | 6 | 0 | 6 | ||
| DB3812II | 3a | 1p36, 9q,11q23q25,Y | - | 4 | 0 | 4 | ||
| DB2144II | 3a | 8p21p23 | 12q15q21 | 1 | 1 | 2 | ||
| 9633 4 SS | 3a | 1p36 | - | 1 | 0 | 1 | ||
| 11510 A4 | 3a | 9p21 | - | 1 | 0 | 1 | ||
| U2581/04 | 3a | 2p23p25 | 4, 6q13q21, 13q22q24 | 1 | 3 | 4 | ||
| P8210/04 | 3a | 8p23,15q25q26,16p21 | 3q21 | 3 | 1 | 4 | ||
| P7118/07 | 3a | 1p36, 8p21p23,11q25, 16, 18q | 3q26 | 5 | 1 | 6 | ||
| DB366II | 3b | 1p36,3p24p26,Y | 13q14q21 | 3 | 1 | 4 | ||
| 9540A4 | 3b | - | - | 0 | 0 | 0 | ||
| 12022B5 | 3b | 8p22p23 | 5q23 | 1 | 1 | 2 | ||
| DB27511-09 | 3b | 5q34q35,9 | - | 2 | 0 | 2 | ||
| DB07/32416 | 3b | 8p21p23,9p,12q24,16,17,20 | 2q21q32, 3q21q27,6q11q23, 12q13q22 | 6 | 4 | 10 | ||
| U7443/00 | 4 | 15q25q26 | 2q23q31, 4q26q28 ,5q21q22, 13q21 | 1 | 4 | 5 | ||
| H15181IF | 4 | 3p24p26, 6p24p25, 13q14q21,20p12p13 | 16q12q13 | 4 | 1 | 5 | ||
| U867/04 | 4 | 15q23q26,16,20 | 4, 12q15, 13q21q31 | 3 | 3 | 6 | ||
| DB29902 | 4 | 1p,16p | - | 2 | 0 | 2 | ||
| H15028-95 | 4 | 1p36,1q32q44, 2p23p25, 3p25p26, 4p16, 5p15, 6p22p25, 6q25q27, 7p21, 8p21p23, 9p24, 10p13p15, 10q23q26, 11q23q25, 12p12p13, 14,16p, 17, 20 | - | 19 | 0 | 19 | ||
CGH results of Upper urothelial tract-urothelial carcinomas (UUT-UC) in detail.
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| 3322-90 | Ta | 11q22qter, 18q,Y | 3q24qter, 5p, 8q, 12 | 3 | 4 | 7 | ||||
| 3902049 | Ta | 9 | 1q | 1 | 1 | 2 | ||||
| 3473943 | Ta | 9q | 7,13 | 1 | 2 | 3 | ||||
| 13724-96 | Ta | 9q, 10q25qter | - | 2 | 0 | 2 | ||||
| 2727001 | Ta | 9q, 14q21qter | - | 2 | 0 | 2 | ||||
| 3914353 | Ta | 3p21 | - | 1 | 0 | 1 | ||||
| 3384496 | Ta | 9,13q,17p | 8q | 3 | 1 | 4 | ||||
| 3689716 | Ta | 9q | 4, 7p21pter | 1 | 2 | 3 | ||||
| 3849366 | Ta | 5q31qter, 8p, 16q, 13q11q21 | 1q, 3, 5p, 6p, | 4 | 8 | 12 | ||||
| 5015410 | Ta | 16p, 17p | 4q, 6q | 2 | 2 | 4 | ||||
| 2395927 | Ta | 7q22q31, 9 10q23qter,11p,17p | - | 5 | 0 | 5 | ||||
| 3834847 | Ta | 9 | - | 1 | 0 | 1 | ||||
| 2415-92 | Ta | 9 | - | 1 | 0 | 1 | ||||
| 3046251 | Ta | 9q, 11p | 7, 13 | 2 | 2 | 4 | ||||
| 7940-98 | 1 | 8p, 9q, 11p | 2q, 8q | 3 | 2 | 5 | ||||
| 19495-95 | 1 | 8p, 11q, 16q | 4p, 16p, 20q | 3 | 3 | 6 | ||||
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| 7553-98 | 2 | - | 5, 8q | 0 | 2 | 2 | ||||
| 8486-98 | 2 | - | 1q | 0 | 1 | 1 | ||||
| 3719887 | 3 | 18q | 6p22pter, 8q13q22 | 1 | 2 | 3 | ||||
| 6832-93 | 3 | 3p, 4p16pter, 9p, 10q23qter, 11q14qter, 13q, 17p, 18q, Y | 1q,2,3q,5p,7q,12,14 | 9 | 7 | 16 | ||||
| 4990-96 | 3 | 8p,11p,13q,16p,17p | 1p32q32,3q, | 5 | 6 | 11 | ||||
| 2886206 | 3 | 13 | 2p16pter,5p,7,8q,10p,16p | 1 | 6 | 7 | ||||
| 3968480 | 3 | 3p12p22,8p,10q21qter | - | 3 | 0 | 3 | ||||
| 2505883 | 3 | 3p12p23,7q11q33,8p,9p,10q21qter,13q11q32,16p | 2q32qter,4p,5p,6,8q | 7 | 5 | 12 | ||||
| 1510534 | 3 | 3p, 4, 5q13qter, 9q, 10q, 11,13q11q31, 17p, 21 |
| 9 | 8 | 17 | ||||
| 18899-96 | 3 | 4q12q31, 7q21q34, 9pterq32, 11q, 13, 17p, Y | - | 7 | 0 | 7 | ||||
Amplicons are depicted in bold type
Figure 1Superkaryogram of 29 CDC (A) and 26 UUT-UC (B) tumors.
Losses of DNA are shown as lines on the left sides of chromosome ideograms, gains on the right side. High-level amplifications (amplicons) are shown as thick bars at the corresponding chromosome regions. Significant differences are highlighted by orange boxes.
Figure 2Comparison of chromosomal aberrations in CDC and UUT-UC tumors in percent.
Losses of chromosomal material are shown on the left side, gains on the right side.
Comparison of the most common aberrations and their frequencies in CDC and UUT-UC tumors.
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| 1q | - | 1q | 1 (4.5) | 1q | 2 (12.5) | 1q | 2 (20) |
| 2q | 1 (14.2) | 2q | 2 (9.0) | 2q | 1 (6.25) | 2q | 2 (20) |
| 3q | 1 (14.2) | 3q | 3 (13.5) | 3q | 2 (12.5) | 3q | 2 (20) |
| 5p | - | 5p | 1 (4.5) | 5p | 2 (12.5) | 5p | 5 (50) |
| 6p24 | - | 6p24-ter | - | 6p24-ter | 6 (37.5) | 6p24-ter | 3 (30) |
| 7 | - | 7 | - | 7 | 4 (25.0) | 7 | 1 (10) |
| 8q | - | 8q | - | 8q | 3 (18.75) | 8q21 | 6 (60) |
| 12q | 2 (28.4) | 12q | 5 (22.5) | 12q | 1 (6.25) | 12q | 2 (20) |
| 13q22-24 | 1 (14.2) | 13q22-24 | 5 (22.5) | 13q22-24 | 2 (12.5) | 13q22-24 | 1 (10) |
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| 1p36 | - | 1p36 | 7 (31.8) | 1p36 | - | 1p36 | - |
| 3p | - | 3p | 3 (13.5) | 3p | 1 (6.25) | 3p | 4 (40) |
| 6p24-25 | - | 6p24-25 | 4 (18.0) | 6p24-25 | - | 6p24-25 | - |
| 8p | 1 (14.2) | 8p | 10(45.5) | 8p | 3 (18.75) | 8p | 3 (30) |
| 9p | 2 (28.4) | 9p | 5 (22.5) | 9p | 5 (31.25) | 9p | 3 (30) |
| 9q | 1 (14.2) | 9q | 3 (13.5) | 9q | 11 (68.75) | 9q | 2 (20) |
| 10q23-ter | 2 (28.4) | 10q23-ter | 3 (13.5) | 10q23-ter | 1 (6.25) | 10q23-ter | 4 (40) |
| 13q11-31 | - | 13q11-31 | 3 (13.5) | 13q11-31 | 1 (6.25) | 13q11-31 | 5 (50) |
| 15q25-ter | 1 (14.2) | 15q25-ter | 4 (18.0) | 15q25-ter | - | 15q25-ter | - |
| 16p12 | 2 (28.4) | 16p12 | 7 (31,8) | 16p12 | 1 (6.25) | 16p12 | 2 (20) |
| 17p | 1 (14.2) | 17p | 3 (13.5) | 17p | 3 (18.75) | 17p | 4 (40) |
| 20 | 2 (28.4) | 20 | 5 (22.5) | 20 | - | 20 | - |