Literature DB >> 32359397

Comprehensive Molecular Characterization Identifies Distinct Genomic and Immune Hallmarks of Renal Medullary Carcinoma.

Pavlos Msaouel1, Gabriel G Malouf2, Xiaoping Su3, Hui Yao3, Durga N Tripathi4, Melinda Soeung5, Jianjun Gao6, Priya Rao7, Cristian Coarfa8, Chad J Creighton9, Jean-Philippe Bertocchio10, Selvi Kunnimalaiyaan11, Asha S Multani12, Jorge Blando13, Rong He6, Daniel D Shapiro14, Luigi Perelli6, Sanjana Srinivasan15, Federica Carbone6, Patrick G Pilié6, Menuka Karki4, Riyad N H Seervai16, Bujamin H Vokshi2, Dolores Lopez-Terrada17, Emily H Cheng18, Ximing Tang19, Wei Lu19, Ignacio I Wistuba19, Timothy C Thompson6, Irwin Davidson20, Virginia Giuliani21, Katharina Schlacher11, Alessandro Carugo21, Timothy P Heffernan21, Padmanee Sharma22, Jose A Karam23, Christopher G Wood14, Cheryl L Walker24, Giannicola Genovese25, Nizar M Tannir26.   

Abstract

Renal medullary carcinoma (RMC) is a highly lethal malignancy that mainly afflicts young individuals of African descent and is resistant to all targeted agents used to treat other renal cell carcinomas. Comprehensive genomic and transcriptomic profiling of untreated primary RMC tissues was performed to elucidate the molecular landscape of these tumors. We found that RMC was characterized by high replication stress and an abundance of focal copy-number alterations associated with activation of the stimulator of the cyclic GMP-AMP synthase interferon genes (cGAS-STING) innate immune pathway. Replication stress conferred a therapeutic vulnerability to drugs targeting DNA-damage repair pathways. Elucidation of these previously unknown RMC hallmarks paves the way to new clinical trials for this rare but highly lethal malignancy.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  SMARCB1; cGAS-STING pathway; molecular profiling; renal medullary carcinoma; replication stress

Mesh:

Substances:

Year:  2020        PMID: 32359397      PMCID: PMC7288373          DOI: 10.1016/j.ccell.2020.04.002

Source DB:  PubMed          Journal:  Cancer Cell        ISSN: 1535-6108            Impact factor:   31.743


  105 in total

1.  SIFT missense predictions for genomes.

Authors:  Robert Vaser; Swarnaseetha Adusumalli; Sim Ngak Leng; Mile Sikic; Pauline C Ng
Journal:  Nat Protoc       Date:  2015-12-03       Impact factor: 13.491

2.  High speed of fork progression induces DNA replication stress and genomic instability.

Authors:  Apolinar Maya-Mendoza; Pavel Moudry; Joanna Maria Merchut-Maya; MyungHee Lee; Robert Strauss; Jiri Bartek
Journal:  Nature       Date:  2018-06-27       Impact factor: 49.962

3.  Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.

Authors:  Martin J Aryee; Andrew E Jaffe; Hector Corrada-Bravo; Christine Ladd-Acosta; Andrew P Feinberg; Kasper D Hansen; Rafael A Irizarry
Journal:  Bioinformatics       Date:  2014-01-28       Impact factor: 6.937

4.  Tumor Xenografts of Human Clear Cell Renal Cell Carcinoma But Not Corresponding Cell Lines Recapitulate Clinical Response to Sunitinib: Feasibility of Using Biopsy Samples.

Authors:  Yiyu Dong; Brandon J Manley; Maria F Becerra; Almedina Redzematovic; Jozefina Casuscelli; Daniel M Tennenbaum; Ed Reznik; Song Han; Nicole Benfante; Ying-Bei Chen; Maria E Arcila; Omer Aras; Martin H Voss; Darren R Feldman; Robert J Motzer; Nicola Fabbri; John H Healey; Patrick J Boland; Mohit Chawla; Jeremy C Durack; Chung-Han Lee; Jonathan A Coleman; Paul Russo; A Ari Hakimi; Emily H Cheng; James J Hsieh
Journal:  Eur Urol Focus       Date:  2016-08-25

5.  The Molecular Signatures Database (MSigDB) hallmark gene set collection.

Authors:  Arthur Liberzon; Chet Birger; Helga Thorvaldsdóttir; Mahmoud Ghandi; Jill P Mesirov; Pablo Tamayo
Journal:  Cell Syst       Date:  2015-12-23       Impact factor: 10.304

6.  Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration.

Authors:  Helga Thorvaldsdóttir; James T Robinson; Jill P Mesirov
Journal:  Brief Bioinform       Date:  2012-04-19       Impact factor: 11.622

7.  p53 Is a Master Regulator of Proteostasis in SMARCB1-Deficient Malignant Rhabdoid Tumors.

Authors:  Alessandro Carugo; Rosalba Minelli; Luigi Sapio; Melinda Soeung; Federica Carbone; Frederick S Robinson; James Tepper; Ziheng Chen; Sara Lovisa; Maria Svelto; Samirkumar Amin; Sanjana Srinivasan; Edoardo Del Poggetto; Sara Loponte; Francesca Puca; Prasenjit Dey; Gabriel G Malouf; Xiaoping Su; Liren Li; Dolores Lopez-Terrada; Dinesh Rakheja; Alexander J Lazar; George J Netto; Priya Rao; Alessandro Sgambato; Anirban Maitra; Durga N Tripathi; Cheryl L Walker; Jose A Karam; Timothy P Heffernan; Andrea Viale; Charles W M Roberts; Pavlos Msaouel; Nizar M Tannir; Giulio F Draetta; Giannicola Genovese
Journal:  Cancer Cell       Date:  2019-02-11       Impact factor: 38.585

8.  FindFoci: a focus detection algorithm with automated parameter training that closely matches human assignments, reduces human inconsistencies and increases speed of analysis.

Authors:  Alex D Herbert; Antony M Carr; Eva Hoffmann
Journal:  PLoS One       Date:  2014-12-05       Impact factor: 3.240

9.  Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.

Authors:  Michael I Love; Wolfgang Huber; Simon Anders
Journal:  Genome Biol       Date:  2014       Impact factor: 13.583

10.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

View more
  21 in total

Review 1.  Context-dependent functions of pattern recognition receptors in cancer.

Authors:  Si Ming Man; Brendan J Jenkins
Journal:  Nat Rev Cancer       Date:  2022-03-30       Impact factor: 69.800

2.  Molecular Characterization of the Tumor Microenvironment in Renal Medullary Carcinoma.

Authors:  David S Tourigny; Mark Zucker; Minsoo Kim; Paul Russo; Jonathan Coleman; Chung-Han Lee; Maria I Carlo; Ying-Bei Chen; A Ari Hakimi; Ritesh R Kotecha; Ed Reznik
Journal:  Front Oncol       Date:  2022-06-28       Impact factor: 5.738

3.  Validation of a Novel Three-Dimensional (3D Fusion) Gross Sampling Protocol for Clear Cell Renal Cell Carcinoma to Overcome Intratumoral Heterogeneity: The Meet-Uro 18 Study.

Authors:  Matteo Brunelli; Guido Martignoni; Giorgio Malpeli; Alessandro Volpe; Luca Cima; Maria Rosaria Raspollini; Mattia Barbareschi; Alessandro Tafuri; Giulia Masi; Luisa Barzon; Serena Ammendola; Manuela Villanova; Maria Angela Cerruto; Michele Milella; Sebastiano Buti; Melissa Bersanelli; Giuseppe Fornarini; Sara Elena Rebuzzi; Valerio Gaetano Vellone; Gabriele Gaggero; Giuseppe Procopio; Elena Verzoni; Sergio Bracarda; Martina Fanelli; Roberto Sabbatini; Rodolfo Passalacqua; Bruno Perrucci; Maria Olga Giganti; Maddalena Donini; Stefano Panni; Marcello Tucci; Veronica Prati; Cinzia Ortega; Anna Caliò; Albino Eccher; Filippo Alongi; Giovanni Pappagallo; Roberto Iacovelli; Alessandra Mosca; Paolo Umari; Ilaria Montagnani; Stefano Gobbo; Francesco Atzori; Enrico Munari; Marco Maruzzo; Umberto Basso; Francesco Pierconti; Carlo Patriarca; Piergiuseppe Colombo; Alberto Lapini; Giario Conti; Roberto Salvioni; Enrico Bollito; Andrea Cossarizza; Francesco Massari; Mimma Rizzo; Renato Franco; Federica Zito-Marino; Yoseba Aberasturi Plata; Francesca Galuppini; Marta Sbaraglia; Matteo Fassan; Angelo Paolo Dei Tos; Maurizio Colecchia; Holger Moch; Maurizio Scaltriti; Camillo Porta; Brett Delahunt; Gianluca Giannarini; Roberto Bortolus; Pasquale Rescigno; Giuseppe Luigi Banna; Alessio Signori; Miguel Angel Llaja Obispo; Roberto Perris; Alessandro Antonelli
Journal:  J Pers Med       Date:  2022-04-30

4.  KCNN4 may weaken anti-tumor immune response via raising Tregs and diminishing resting mast cells in clear cell renal cell carcinoma.

Authors:  Yankang Cui; Tianyi Shen; Feng Xu; Jing Zhang; Yuhao Wang; Jiajin Wu; Hengtao Bu; Dian Fu; Bo Fang; Huichen Lv; Suchun Wang; Changjie Shi; Bianjiang Liu; Haowei He; Hao Tang; Jingping Ge
Journal:  Cancer Cell Int       Date:  2022-06-10       Impact factor: 6.429

Review 5.  Recent Advances in Renal Medullary Carcinoma.

Authors:  Yongdong Su; Andrew L Hong
Journal:  Int J Mol Sci       Date:  2022-06-26       Impact factor: 6.208

6.  From Basic Science to Clinical Translation in Kidney Cancer: A Report from the Second Kidney Cancer Research Summit.

Authors:  Toni K Choueiri; Laurence Albiges; Michael B Atkins; Ziad Bakouny; Gennady Bratslavsky; David A Braun; Naomi B Haas; John B A G Haanen; A Ari Hakimi; Michael A S Jewett; Eric Jonasch; William G Kaelin; Payal Kapur; Chris Labaki; Bryan Lewis; David F McDermott; Sumanta K Pal; Kevin Pels; Susan Poteat; Thomas Powles; W Kimryn Rathmell; Brian I Rini; Sabina Signoretti; Nizar M Tannir; Robert G Uzzo; Hans J Hammers
Journal:  Clin Cancer Res       Date:  2022-03-01       Impact factor: 13.801

Review 7.  Systemic Therapies for the Management of Non-Clear Cell Renal Cell Carcinoma: What Works, What Doesn't, and What the Future Holds.

Authors:  Panagiotis Zoumpourlis; Giannicola Genovese; Nizar M Tannir; Pavlos Msaouel
Journal:  Clin Genitourin Cancer       Date:  2020-12-02       Impact factor: 2.872

8.  Molecular hallmarks of renal medullary carcinoma: more to c-MYC than meets the eye.

Authors:  Pavlos Msaouel; Cheryl L Walker; Giannicola Genovese; Nizar M Tannir
Journal:  Mol Cell Oncol       Date:  2020-06-23

9.  Novel Patient Metastatic Pleural Effusion-Derived Xenograft Model of Renal Medullary Carcinoma Demonstrates Therapeutic Efficacy of Sunitinib.

Authors:  Alex Q Lee; Masami Ijiri; Ryan Rodriguez; Regina Gandour-Edwards; Joyce Lee; Clifford G Tepper; Yueju Li; Laurel Beckett; Kit Lam; Neal Goodwin; Noriko Satake
Journal:  Front Oncol       Date:  2021-03-26       Impact factor: 6.244

10.  Haplotype-resolved germline and somatic alterations in renal medullary carcinomas.

Authors:  William C Hahn; Matthew Meyerson; Andrew L Hong; Kar-Tong Tan; Hyunji Kim; Jian Carrot-Zhang; Yuxiang Zhang; Won Jun Kim; Guillaume Kugener; Jeremiah A Wala; Thomas P Howard; Yueh-Yun Chi; Rameen Beroukhim; Heng Li; Gavin Ha; Seth L Alper; Elizabeth J Perlman; Elizabeth A Mullen
Journal:  Genome Med       Date:  2021-07-14       Impact factor: 11.117

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.