Literature DB >> 24167285

Hypermutability and error catastrophe due to defects in ribonucleotide reductase.

Deepti Ahluwalia1, Roel M Schaaper.   

Abstract

The enzyme ribonucleotide reductase (RNR) plays a critical role in the production of deoxynucleoside-5'-triphosphates (dNTPs), the building blocks for DNA synthesis and replication. The levels of the cellular dNTPs are tightly controlled, in large part through allosteric control of RNR. One important reason for controlling the dNTPs relates to their ability to affect the fidelity of DNA replication and, hence, the cellular mutation rate. We have previously isolated a set of mutants of Escherichia coli RNR that are characterized by altered dNTP pools and increased mutation rates (mutator mutants). Here, we show that one particular set of RNR mutants, carrying alterations at the enzyme's allosteric specificity site, is characterized by relatively modest dNTP pool deviations but exceptionally strong mutator phenotypes, when measured in a mutational forward assay (>1,000-fold increases). We provide evidence indicating that this high mutability is due to a saturation of the DNA mismatch repair system, leading to hypermutability and error catastrophe. The results indicate that, surprisingly, even modest deviations of the cellular dNTP pools, particularly when the pool deviations promote particular types of replication errors, can have dramatic consequences for mutation rates.

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Year:  2013        PMID: 24167285      PMCID: PMC3832021          DOI: 10.1073/pnas.1310849110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  51 in total

1.  Escherichia coli mutator mutD5 is defective in the mutHLS pathway of DNA mismatch repair.

Authors:  R M Schaaper
Journal:  Genetics       Date:  1989-02       Impact factor: 4.562

2.  Spontaneous mutation in the Escherichia coli lacI gene.

Authors:  R M Schaaper; R L Dunn
Journal:  Genetics       Date:  1991-10       Impact factor: 4.562

Review 3.  Mechanisms and biological effects of mismatch repair.

Authors:  P Modrich
Journal:  Annu Rev Genet       Date:  1991       Impact factor: 16.830

4.  Three-dimensional structure of the free radical protein of ribonucleotide reductase.

Authors:  P Nordlund; B M Sjöberg; H Eklund
Journal:  Nature       Date:  1990-06-14       Impact factor: 49.962

5.  Mechanisms of mutagenesis in the Escherichia coli mutator mutD5: role of DNA mismatch repair.

Authors:  R M Schaaper
Journal:  Proc Natl Acad Sci U S A       Date:  1988-11       Impact factor: 11.205

6.  A set of lacZ mutations in Escherichia coli that allow rapid detection of each of the six base substitutions.

Authors:  C G Cupples; J H Miller
Journal:  Proc Natl Acad Sci U S A       Date:  1989-07       Impact factor: 11.205

7.  Nucleoside diphosphate kinase from Escherichia coli; its overproduction and sequence comparison with eukaryotic enzymes.

Authors:  H Hama; N Almaula; C G Lerner; S Inouye; M Inouye
Journal:  Gene       Date:  1991-08-30       Impact factor: 3.688

8.  Complete analysis of cellular nucleotides by two-dimensional thin layer chromatography.

Authors:  B R Bochner; B N Ames
Journal:  J Biol Chem       Date:  1982-08-25       Impact factor: 5.157

9.  Mutator mutations in Escherichia coli induced by the insertion of phage mu and the transposable resistance elements Tn5 and Tn10.

Authors:  E C Siegel; S L Wain; S F Meltzer; M L Binion; J L Steinberg
Journal:  Mutat Res       Date:  1982-03       Impact factor: 2.433

10.  The extreme mutator effect of Escherichia coli mutD5 results from saturation of mismatch repair by excessive DNA replication errors.

Authors:  R M Schaaper; M Radman
Journal:  EMBO J       Date:  1989-11       Impact factor: 11.598

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  19 in total

1.  The Antibiotic Trimethoprim Displays Strong Mutagenic Synergy with 2-Aminopurine.

Authors:  Sara D'Souza; Justin E Miller; Jenny Ahn; Raechel Subandi; Daniel Lozano; James Ramirez; Marisa Goff; Christina Davidian; Jeffrey H Miller
Journal:  Antimicrob Agents Chemother       Date:  2019-01-29       Impact factor: 5.191

Review 2.  Deoxyribonucleotides as genetic and metabolic regulators.

Authors:  Christopher K Mathews
Journal:  FASEB J       Date:  2014-06-13       Impact factor: 5.191

3.  dNTP pool levels modulate mutator phenotypes of error-prone DNA polymerase ε variants.

Authors:  Lindsey N Williams; Lisette Marjavaara; Gary M Knowels; Eric M Schultz; Edward J Fox; Andrei Chabes; Alan J Herr
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-31       Impact factor: 11.205

4.  Substrate Specificity of SAMHD1 Triphosphohydrolase Activity Is Controlled by Deoxyribonucleoside Triphosphates and Phosphorylation at Thr592.

Authors:  Sunbok Jang; Xiaohong Zhou; Jinwoo Ahn
Journal:  Biochemistry       Date:  2016-09-19       Impact factor: 3.162

5.  Extreme dNTP pool changes and hypermutability in dcd ndk strains.

Authors:  Lawrence Tse; Tina Manzhu Kang; Jessica Yuan; Danielle Mihora; Elinne Becket; Katarzyna H Maslowska; Roel M Schaaper; Jeffrey H Miller
Journal:  Mutat Res       Date:  2015-12-29       Impact factor: 2.433

6.  Fluorescence-Based Reporters for Detection of Mutagenesis in E. coli.

Authors:  Melissa Standley; Jennifer Allen; Layla Cervantes; Joshua Lilly; Manel Camps
Journal:  Methods Enzymol       Date:  2017-06-09       Impact factor: 1.600

7.  Mutagen Synergy: Hypermutability Generated by Specific Pairs of Base Analogs.

Authors:  Jocelyn Ang; Lisa Yun Song; Sara D'Souza; Irene L Hong; Rohan Luhar; Madeline Yung; Jeffrey H Miller
Journal:  J Bacteriol       Date:  2016-09-22       Impact factor: 3.490

8.  Ribonucleotides incorporated by the yeast mitochondrial DNA polymerase are not repaired.

Authors:  Paulina H Wanrooij; Martin K M Engqvist; Josefin M E Forslund; Clara Navarrete; Anna Karin Nilsson; Juhan Sedman; Sjoerd Wanrooij; Anders R Clausen; Andrei Chabes
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-06       Impact factor: 11.205

9.  Heterozygous colon cancer-associated mutations of SAMHD1 have functional significance.

Authors:  Matilda Rentoft; Kristoffer Lindell; Phong Tran; Anna Lena Chabes; Robert J Buckland; Danielle L Watt; Lisette Marjavaara; Anna Karin Nilsson; Beatrice Melin; Johan Trygg; Erik Johansson; Andrei Chabes
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-11       Impact factor: 11.205

10.  Suppression of the E. coli SOS response by dNTP pool changes.

Authors:  Katarzyna H Maslowska; Karolina Makiela-Dzbenska; Iwona J Fijalkowska; Roel M Schaaper
Journal:  Nucleic Acids Res       Date:  2015-03-30       Impact factor: 16.971

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