Literature DB >> 24928192

Deoxyribonucleotides as genetic and metabolic regulators.

Christopher K Mathews1.   

Abstract

For >35 yr, we have known that the accuracy of DNA replication is controlled in large part by the relative concentrations of the 4 canonical deoxyribonucleoside 5'-triphosphates (dNTPs) at the replisome. Since this field was last reviewed, ∼8 yr ago, there has been increased understanding of the mutagenic pathways as they occur in living cells. At the same time, aspects of deoxyribonucleotide metabolism have been shown to be critically involved in processes as diverse as cell cycle control, protooncogene expression, cellular defense against HIV infection, replication rate control, telomere length control, and mitochondrial function. Evidence supports a relationship between dNTP pools and microsatellite repeat instability. Relationships between dNTP synthesis and breakdown in controlling steady-state pools have become better defined. In addition, new experimental approaches have allowed definitive analysis of mutational pathways induced by dNTP pool abnormalities, both in Escherichia coli and in yeast. Finally, ribonucleoside triphosphate (rNTP) pools have been shown to be critical determinants of DNA replication fidelity. These developments are discussed in this review article. © FASEB.

Entities:  

Keywords:  cell cycle; mutagenesis; nucleotide pools; oncogenes

Mesh:

Substances:

Year:  2014        PMID: 24928192      PMCID: PMC5395721          DOI: 10.1096/fj.14-251249

Source DB:  PubMed          Journal:  FASEB J        ISSN: 0892-6638            Impact factor:   5.191


  76 in total

1.  Endogenous DNA replication stress results in expansion of dNTP pools and a mutator phenotype.

Authors:  Marta B Davidson; Yuki Katou; Andrea Keszthelyi; Tina L Sing; Tian Xia; Jiongwen Ou; Jessica A Vaisica; Neroshan Thevakumaran; Lisette Marjavaara; Chad L Myers; Andrei Chabes; Katsuhiko Shirahige; Grant W Brown
Journal:  EMBO J       Date:  2012-01-10       Impact factor: 11.598

2.  Constitutively high dNTP concentration inhibits cell cycle progression and the DNA damage checkpoint in yeast Saccharomyces cerevisiae.

Authors:  Andrei Chabes; Bruce Stillman
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-16       Impact factor: 11.205

3.  The deoxynucleotide triphosphohydrolase SAMHD1 is a major regulator of DNA precursor pools in mammalian cells.

Authors:  Elisa Franzolin; Giovanna Pontarin; Chiara Rampazzo; Cristina Miazzi; Paola Ferraro; Elisa Palumbo; Peter Reichard; Vera Bianchi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-15       Impact factor: 11.205

4.  Restricted 5'-end gap repair of HIV-1 integration due to limited cellular dNTP concentrations in human primary macrophages.

Authors:  Sarah K Van Cor-Hosmer; Dong-Hyun Kim; Michele B Daly; Waaqo Daddacha; Baek Kim
Journal:  J Biol Chem       Date:  2013-10-04       Impact factor: 5.157

5.  The NTP pyrophosphatase DCTPP1 contributes to the homoeostasis and cleansing of the dNTP pool in human cells.

Authors:  Cristina E Requena; Guiomar Pérez-Moreno; Luis M Ruiz-Pérez; Antonio E Vidal; Dolores González-Pacanowska
Journal:  Biochem J       Date:  2014-04-01       Impact factor: 3.857

6.  Highly mutagenic and severely imbalanced dNTP pools can escape detection by the S-phase checkpoint.

Authors:  Dinesh Kumar; Jörgen Viberg; Anna Karin Nilsson; Andrei Chabes
Journal:  Nucleic Acids Res       Date:  2010-03-09       Impact factor: 16.971

7.  Mutational consequences of dNTP pool imbalances in E. coli.

Authors:  Roel M Schaaper; Christopher K Mathews
Journal:  DNA Repair (Amst)       Date:  2012-12-06

8.  Mitochondrial deoxynucleotide pool sizes in mouse liver and evidence for a transport mechanism for thymidine monophosphate.

Authors:  Paola Ferraro; Luca Nicolosi; Paolo Bernardi; Peter Reichard; Vera Bianchi
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-21       Impact factor: 11.205

9.  Tetramerization of SAMHD1 is required for biological activity and inhibition of HIV infection.

Authors:  Junpeng Yan; Sarabpreet Kaur; Maria DeLucia; Caili Hao; Jennifer Mehrens; Chuanping Wang; Marcin Golczak; Krzysztof Palczewski; Angela M Gronenborn; Jinwoo Ahn; Jacek Skowronski
Journal:  J Biol Chem       Date:  2013-02-20       Impact factor: 5.157

10.  RNase H and postreplication repair protect cells from ribonucleotides incorporated in DNA.

Authors:  Federico Lazzaro; Daniele Novarina; Flavio Amara; Danielle L Watt; Jana E Stone; Vincenzo Costanzo; Peter M Burgers; Thomas A Kunkel; Paolo Plevani; Marco Muzi-Falconi
Journal:  Mol Cell       Date:  2012-01-13       Impact factor: 17.970

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  25 in total

1.  A user-friendly, high-throughput tool for the precise fluorescent quantification of deoxyribonucleoside triphosphates from biological samples.

Authors:  Judit Eszter Szabó; Éva Viola Surányi; Bence Sándor Mébold; Tamás Trombitás; Mihály Cserepes; Judit Tóth
Journal:  Nucleic Acids Res       Date:  2020-05-07       Impact factor: 16.971

2.  The role of dNTP metabolites in control of the embryonic cell cycle.

Authors:  Boyang Liu; Jörg Großhans
Journal:  Cell Cycle       Date:  2019-09-22       Impact factor: 4.534

3.  Heart mitochondrial TTP synthesis and the compartmentalization of TMP.

Authors:  Vasudeva G Kamath; Chia-Heng Hsiung; Zachary J Lizenby; Edward E McKee
Journal:  J Biol Chem       Date:  2014-12-11       Impact factor: 5.157

4.  Genome-wide alterations of uracil distribution patterns in human DNA upon chemotherapeutic treatments.

Authors:  Hajnalka L Pálinkás; Angéla Békési; Gergely Róna; Lőrinc Pongor; Gábor Papp; Gergely Tihanyi; Eszter Holub; Ádám Póti; Carolina Gemma; Simak Ali; Michael J Morten; Eli Rothenberg; Michele Pagano; Dávid Szűts; Balázs Győrffy; Beáta G Vértessy
Journal:  Elife       Date:  2020-09-21       Impact factor: 8.140

5.  The Yeast Cyclin-Dependent Kinase Routes Carbon Fluxes to Fuel Cell Cycle Progression.

Authors:  Jennifer C Ewald; Andreas Kuehne; Nicola Zamboni; Jan M Skotheim
Journal:  Mol Cell       Date:  2016-05-19       Impact factor: 17.970

Review 6.  SAMHD1: Recurring roles in cell cycle, viral restriction, cancer, and innate immunity.

Authors:  Christopher H Mauney; Thomas Hollis
Journal:  Autoimmunity       Date:  2018-03-27       Impact factor: 2.815

7.  Identification of Inhibitors of the dNTP Triphosphohydrolase SAMHD1 Using a Novel and Direct High-Throughput Assay.

Authors:  Christopher H Mauney; Fred W Perrino; Thomas Hollis
Journal:  Biochemistry       Date:  2018-11-13       Impact factor: 3.162

8.  Arginine kinase shows nucleoside diphosphate kinase-like activity toward deoxythymidine diphosphate.

Authors:  Alonso A Lopez-Zavala; Rogerio R Sotelo-Mundo; Jose M Hernandez-Flores; Maria E Lugo-Sanchez; Rocio Sugich-Miranda; Karina D Garcia-Orozco
Journal:  J Bioenerg Biomembr       Date:  2016-04-12       Impact factor: 2.945

9.  The mutation spectrum in genomic late replication domains shapes mammalian GC content.

Authors:  Ephraim Kenigsberg; Yishai Yehuda; Lisette Marjavaara; Andrea Keszthelyi; Andrei Chabes; Amos Tanay; Itamar Simon
Journal:  Nucleic Acids Res       Date:  2016-04-16       Impact factor: 16.971

10.  Characterization of Photorhabdus Virulence Cassette as a causative agent in the emerging pathogen Photorhabdus asymbiotica.

Authors:  Xia Wang; Jiaxuan Cheng; Jiawei Shen; Liguo Liu; Ningning Li; Ning Gao; Feng Jiang; Qi Jin
Journal:  Sci China Life Sci       Date:  2021-06-25       Impact factor: 6.038

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