Literature DB >> 24166303

Primary microRNA processing assay reconstituted using recombinant Drosha and DGCR8.

Ian Barr1, Feng Guo.   

Abstract

In animals, the Microprocessor complex cleaves primary transcripts of microRNAs (pri-miRNAs) to produce precursor microRNAs in the nucleus. The core components of Microprocessor include the Drosha ribonuclease and its RNA-binding partner protein DiGeorge critical region 8 (DGCR8). DGCR8 has been shown to tightly bind an Fe(III) heme cofactor, which activates its pri-miRNA processing activity. Here we describe how to reconstitute pri-miRNA processing using recombinant human Drosha and DGCR8 proteins. In particular, we present the procedures for expressing and purifying DGCR8 as an Fe(III) heme-bound dimer, the most active form of this protein, and for estimating its heme content.

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Year:  2014        PMID: 24166303      PMCID: PMC4788497          DOI: 10.1007/978-1-62703-703-7_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  36 in total

1.  MicroRNA maturation: stepwise processing and subcellular localization.

Authors:  Yoontae Lee; Kipyoung Jeon; Jun-Tae Lee; Sunyoung Kim; V Narry Kim
Journal:  EMBO J       Date:  2002-09-02       Impact factor: 11.598

2.  Ferric, not ferrous, heme activates RNA-binding protein DGCR8 for primary microRNA processing.

Authors:  Ian Barr; Aaron T Smith; Yanqiu Chen; Rachel Senturia; Judith N Burstyn; Feng Guo
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

3.  DiGeorge critical region 8 (DGCR8) is a double-cysteine-ligated heme protein.

Authors:  Ian Barr; Aaron T Smith; Rachel Senturia; Yanqiu Chen; Brooke D Scheidemantle; Judith N Burstyn; Feng Guo
Journal:  J Biol Chem       Date:  2011-03-21       Impact factor: 5.157

4.  DGCR8 recognizes primary transcripts of microRNAs through highly cooperative binding and formation of higher-order structures.

Authors:  Michael Faller; Daniel Toso; Michio Matsunaga; Ivo Atanasov; Rachel Senturia; Yanqiu Chen; Z Hong Zhou; Feng Guo
Journal:  RNA       Date:  2010-06-17       Impact factor: 4.942

5.  The terminal loop region controls microRNA processing by Drosha and Dicer.

Authors:  Xiaoxiao Zhang; Yan Zeng
Journal:  Nucleic Acids Res       Date:  2010-07-21       Impact factor: 16.971

6.  Modulation of microRNA processing by p53.

Authors:  Hiroshi I Suzuki; Kaoru Yamagata; Koichi Sugimoto; Takashi Iwamoto; Shigeaki Kato; Kohei Miyazono
Journal:  Nature       Date:  2009-07-23       Impact factor: 49.962

7.  The nuclear RNase III Drosha initiates microRNA processing.

Authors:  Yoontae Lee; Chiyoung Ahn; Jinju Han; Hyounjeong Choi; Jaekwang Kim; Jeongbin Yim; Junho Lee; Patrick Provost; Olof Rådmark; Sunyoung Kim; V Narry Kim
Journal:  Nature       Date:  2003-09-25       Impact factor: 49.962

8.  Dimerization and heme binding are conserved in amphibian and starfish homologues of the microRNA processing protein DGCR8.

Authors:  Rachel Senturia; Arthur Laganowsky; Ian Barr; Brooke D Scheidemantle; Feng Guo
Journal:  PLoS One       Date:  2012-07-02       Impact factor: 3.240

9.  The RNA-binding protein KSRP promotes the biogenesis of a subset of microRNAs.

Authors:  Michele Trabucchi; Paola Briata; Mariaflor Garcia-Mayoral; Astrid D Haase; Witold Filipowicz; Andres Ramos; Roberto Gherzi; Michael G Rosenfeld
Journal:  Nature       Date:  2009-05-20       Impact factor: 49.962

10.  Antagonistic role of hnRNP A1 and KSRP in the regulation of let-7a biogenesis.

Authors:  Gracjan Michlewski; Javier F Cáceres
Journal:  Nat Struct Mol Biol       Date:  2010-07-18       Impact factor: 15.369

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  2 in total

1.  Cobalt(III) Protoporphyrin Activates the DGCR8 Protein and Can Compensate microRNA Processing Deficiency.

Authors:  Ian Barr; Sara H Weitz; Talia Atkin; PeiKen Hsu; Maria Karayiorgou; Joseph A Gogos; Shimon Weiss; Feng Guo
Journal:  Chem Biol       Date:  2015-06-18

2.  The DGCR8 RNA-binding heme domain recognizes primary microRNAs by clamping the hairpin.

Authors:  Jen Quick-Cleveland; Jose P Jacob; Sara H Weitz; Grant Shoffner; Rachel Senturia; Feng Guo
Journal:  Cell Rep       Date:  2014-06-06       Impact factor: 9.423

  2 in total

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