Literature DB >> 24158264

Noise-induced regime shifts: A quantitative characterization.

Sayantari Ghosh1, Amit Kumar Pal, Indrani Bose.   

Abstract

Diverse complex dynamical systems are known to exhibit abrupt regime shifts at bifurcation points of the saddle-node type. The dynamics of most of these systems, however, have a stochastic component resulting in noise-driven regime shifts even if the system is away from the bifurcation points. In this paper, we propose a new quantitative measure, namely, the propensity transition point as an indicator of stochastic regime shifts. The concepts and the methodology are illustrated for the one-variable May model, a well-known model in ecology and the genetic toggle, a two-variable model of a simple genetic circuit. The general applicability and usefulness of the method for the analysis of regime shifts is further demonstrated in the case of the mycobacterial switch to persistence for which experimental data are available.

Mesh:

Year:  2013        PMID: 24158264     DOI: 10.1140/epje/i2013-13123-y

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  27 in total

1.  Construction of a genetic toggle switch in Escherichia coli.

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2.  Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations.

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Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

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Review 5.  Phenotypic variation in bacteria: the role of feedback regulation.

Authors:  Wiep Klaas Smits; Oscar P Kuipers; Jan-Willem Veening
Journal:  Nat Rev Microbiol       Date:  2006-04       Impact factor: 60.633

6.  Noise in gene expression determines cell fate in Bacillus subtilis.

Authors:  Hédia Maamar; Arjun Raj; David Dubnau
Journal:  Science       Date:  2007-06-14       Impact factor: 47.728

Review 7.  Early-warning signals for critical transitions.

Authors:  Marten Scheffer; Jordi Bascompte; William A Brock; Victor Brovkin; Stephen R Carpenter; Vasilis Dakos; Hermann Held; Egbert H van Nes; Max Rietkerk; George Sugihara
Journal:  Nature       Date:  2009-09-03       Impact factor: 49.962

8.  Noise can induce bimodality in positive transcriptional feedback loops without bistability.

Authors:  Tsz-Leung To; Narendra Maheshri
Journal:  Science       Date:  2010-02-26       Impact factor: 47.728

9.  Self-organized patchiness in asthma as a prelude to catastrophic shifts.

Authors:  Jose G Venegas; Tilo Winkler; Guido Musch; Marcos F Vidal Melo; Dominick Layfield; Nora Tgavalekos; Alan J Fischman; Ronald J Callahan; Giacomo Bellani; R Scott Harris
Journal:  Nature       Date:  2005-03-16       Impact factor: 49.962

10.  Estimating the stochastic bifurcation structure of cellular networks.

Authors:  Carl Song; Hilary Phenix; Vida Abedi; Matthew Scott; Brian P Ingalls; Mads Kaern; Theodore J Perkins
Journal:  PLoS Comput Biol       Date:  2010-03-05       Impact factor: 4.475

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