Literature DB >> 24149573

Homeland security in the C. elegans germ line: insights into the biogenesis and function of piRNAs.

Dionna M Kasper1, Kathryn E Gardner1, Valerie Reinke1.   

Abstract

While most eukaryotic genomes contain transposable elements that can provide select evolutionary advantages to a given organism, failure to tightly control the mobility of such transposable elements can result in compromised genomic integrity of both parental and subsequent generations. Together with the Piwi subfamily of Argonaute proteins, small, non-coding Piwi-interacting RNAs (piRNAs) primarily function in the germ line to defend the genome against the potentially deleterious effects that can be caused by transposition. Here, we describe recent discoveries concerning the biogenesis and function of piRNAs in the nematode Caenorhabditis elegans, illuminating how the faithful production of these mature species can impart a robust defense mechanism for the germ line to counteract problems caused by foreign genetic elements across successive generations by contributing to the epigenetic memory of non-self vs. self.

Entities:  

Keywords:  22G-RNA; Argonaute proteins; C. elegans; Piwi/PRG-1; biogenesis; epigenetics; germ line; piRNA/21U-RNA; transgenerational silencing

Mesh:

Substances:

Year:  2013        PMID: 24149573      PMCID: PMC3928187          DOI: 10.4161/epi.26647

Source DB:  PubMed          Journal:  Epigenetics        ISSN: 1559-2294            Impact factor:   4.528


  67 in total

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Journal:  Science       Date:  2010-12-22       Impact factor: 47.728

5.  Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response.

Authors:  Mei Zhong; Wei Niu; Zhi John Lu; Mihail Sarov; John I Murray; Judith Janette; Debasish Raha; Karyn L Sheaffer; Hugo Y K Lam; Elicia Preston; Cindie Slightham; LaDeana W Hillier; Trisha Brock; Ashish Agarwal; Raymond Auerbach; Anthony A Hyman; Mark Gerstein; Susan E Mango; Stuart K Kim; Robert H Waterston; Valerie Reinke; Michael Snyder
Journal:  PLoS Genet       Date:  2010-02-19       Impact factor: 5.917

Review 6.  The biogenesis and function of PIWI proteins and piRNAs: progress and prospect.

Authors:  Travis Thomson; Haifan Lin
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7.  Repertoire and evolution of miRNA genes in four divergent nematode species.

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8.  Differential localization and independent acquisition of the H3K9me2 and H3K9me3 chromatin modifications in the Caenorhabditis elegans adult germ line.

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Journal:  PLoS Genet       Date:  2010-01-22       Impact factor: 5.917

9.  The Argonaute CSR-1 and its 22G-RNA cofactors are required for holocentric chromosome segregation.

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Journal:  Cell       Date:  2009-10-02       Impact factor: 41.582

10.  Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline.

Authors:  Weifeng Gu; Masaki Shirayama; Darryl Conte; Jessica Vasale; Pedro J Batista; Julie M Claycomb; James J Moresco; Elaine M Youngman; Jennifer Keys; Matthew J Stoltz; Chun-Chieh G Chen; Daniel A Chaves; Shenghua Duan; Kristin D Kasschau; Noah Fahlgren; John R Yates; Shohei Mitani; James C Carrington; Craig C Mello
Journal:  Mol Cell       Date:  2009-10-01       Impact factor: 17.970

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  13 in total

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5.  Germ Granules Prevent Accumulation of Somatic Transcripts in the Adult Caenorhabditis elegans Germline.

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6.  Germ-granule components prevent somatic development in the C. elegans germline.

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Review 7.  Elements and machinery of non-coding RNAs: toward their taxonomy.

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Review 8.  Endogenous siRNAs: regulators of internal affairs.

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Review 10.  Transcriptional quiescence in primordial germ cells.

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