Literature DB >> 24143267

Unraveling the Primary Isomerization Dynamics in Cyanobacterial Phytochrome Cph1 with Multi-pulse Manipulations.

Peter W Kim1, Nathan C Rockwell, Lucy H Freer, Che-Wei Chang, Shelley S Martin, J Clark Lagarias, Delmar S Larsen.   

Abstract

The ultrafast mechanisms underlying the initial photoisomerization (PrLumi-R) in the forward reaction of the cyanobacterial photoreceptor Cph1 were explored with multipulse pump-dump-probe transient spectroscopy. A recently postulated multi-population model was used to fit the transient pump-dump-probe and dump-induced depletion signals. We observed dump-induced depletion of the Lumi-R photoproduct, demonstrating that photoisomerization occurs via evolution on both the excited- and ground-state electronic surfaces. Excited-state equilibrium was not observed, as shown via the absence of a dump-induced excited-state "Le Châtelier redistribution" of excited-state populations. The importance of incorporating the inhomogeneous dynamics of Cph1 in interpreting measured transient data is discussed.

Entities:  

Keywords:  excited-state dynamic; photoreceptors; phytochromes; pump-dump-probe; transient absorption

Year:  2013        PMID: 24143267      PMCID: PMC3798021          DOI: 10.1021/jz401443q

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  26 in total

1.  Light-induced proton release and proton uptake reactions in the cyanobacterial phytochrome Cph1.

Authors:  J J van Thor; B Borucki; W Crielaard; H Otto; T Lamparter; J Hughes; K J Hellingwerf; M P Heyn
Journal:  Biochemistry       Date:  2001-09-25       Impact factor: 3.162

2.  Multichromatic control of gene expression in Escherichia coli.

Authors:  Jeffrey J Tabor; Anselm Levskaya; Christopher A Voigt
Journal:  J Mol Biol       Date:  2010-10-28       Impact factor: 5.469

3.  Formation of the early photoproduct lumi-R of cyanobacterial phytochrome cph1 observed by ultrafast mid-infrared spectroscopy.

Authors:  Jasper J van Thor; Kate L Ronayne; Michael Towrie
Journal:  J Am Chem Soc       Date:  2007-01-10       Impact factor: 15.419

4.  The structure of a complete phytochrome sensory module in the Pr ground state.

Authors:  Lars-Oliver Essen; Jo Mailliet; Jon Hughes
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-17       Impact factor: 11.205

5.  Mid-infrared picosecond pump-dump-probe and pump-repump-probe experiments to resolve a ground-state intermediate in cyanobacterial phytochrome Cph1.

Authors:  Luuk J G W van Wilderen; Ian P Clark; Michael Towrie; Jasper J van Thor
Journal:  J Phys Chem B       Date:  2009-12-24       Impact factor: 2.991

6.  Spectroscopy and a high-resolution crystal structure of Tyr263 mutants of cyanobacterial phytochrome Cph1.

Authors:  Jo Mailliet; Georgios Psakis; Kathleen Feilke; Vitaly Sineshchekov; Lars-Oliver Essen; Jon Hughes
Journal:  J Mol Biol       Date:  2011-08-23       Impact factor: 5.469

7.  Homogeneity of phytochrome Cph1 vibronic absorption revealed by resonance Raman intensity analysis.

Authors:  Katelyn M Spillane; Jyotishman Dasgupta; J Clark Lagarias; Richard A Mathies
Journal:  J Am Chem Soc       Date:  2009-10-07       Impact factor: 15.419

8.  Characterization of recombinant phytochrome from the cyanobacterium Synechocystis.

Authors:  T Lamparter; F Mittmann; W Gärtner; T Börner; E Hartmann; J Hughes
Journal:  Proc Natl Acad Sci U S A       Date:  1997-10-28       Impact factor: 11.205

9.  Protonation state and structural changes of the tetrapyrrole chromophore during the Pr --> Pfr phototransformation of phytochrome: a resonance Raman spectroscopic study.

Authors:  C Kneip; P Hildebrandt; W Schlamann; S E Braslavsky; F Mark; K Schaffner
Journal:  Biochemistry       Date:  1999-11-16       Impact factor: 3.162

10.  Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome.

Authors:  Xiaokun Shu; Antoine Royant; Michael Z Lin; Todd A Aguilera; Varda Lev-Ram; Paul A Steinbach; Roger Y Tsien
Journal:  Science       Date:  2009-05-08       Impact factor: 47.728

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  17 in total

1.  Bacteriophytochrome Photoisomerization Proceeds Homogeneously Despite Heterogeneity in Ground State.

Authors:  Cheng Wang; Moira L Flanagan; Ryan D McGillicuddy; Haibin Zheng; Alan Ruvim Ginzburg; Xiaojing Yang; Keith Moffat; Gregory S Engel
Journal:  Biophys J       Date:  2016-11-15       Impact factor: 4.033

2.  Phototransformation of the red light sensor cyanobacterial phytochrome 2 from Synechocystis species depends on its tongue motifs.

Authors:  Katrin Anders; Alexander Gutt; Wolfgang Gärtner; Lars-Oliver Essen
Journal:  J Biol Chem       Date:  2014-07-10       Impact factor: 5.157

3.  Structural insights into photoactivation and signalling in plant phytochromes.

Authors:  Soshichiro Nagano; Kaoling Guan; Sintayehu Manaye Shenkutie; Christian Feiler; Manfred Weiss; Anastasia Kraskov; David Buhrke; Peter Hildebrandt; Jon Hughes
Journal:  Nat Plants       Date:  2020-05-04       Impact factor: 15.793

4.  The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2.

Authors:  Nathan C Rockwell; Shelley S Martin; Fay-Wei Li; Sarah Mathews; John Clark Lagarias
Journal:  New Phytol       Date:  2017-01-20       Impact factor: 10.151

5.  Protonation Heterogeneity Modulates the Ultrafast Photocycle Initiation Dynamics of Phytochrome Cph1.

Authors:  Julia S Kirpich; L Tyler Mix; Shelley S Martin; Nathan C Rockwell; J Clark Lagarias; Delmar S Larsen
Journal:  J Phys Chem Lett       Date:  2018-06-11       Impact factor: 6.475

6.  Photoconversion changes bilin chromophore conjugation and protein secondary structure in the violet/orange cyanobacteriochrome NpF2164g3' [corrected].

Authors:  Sunghyuk Lim; Nathan C Rockwell; Shelley S Martin; Jerry L Dallas; J Clark Lagarias; James B Ames
Journal:  Photochem Photobiol Sci       Date:  2014-06       Impact factor: 3.982

7.  Correlating structural and photochemical heterogeneity in cyanobacteriochrome NpR6012g4.

Authors:  Sunghyuk Lim; Qinhong Yu; Sean M Gottlieb; Che-Wei Chang; Nathan C Rockwell; Shelley S Martin; Dorte Madsen; J Clark Lagarias; Delmar S Larsen; James B Ames
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-09       Impact factor: 11.205

8.  Conformational heterogeneity of the Pfr chromophore in plant and cyanobacterial phytochromes.

Authors:  Francisco Velazquez Escobar; David von Stetten; Mina Günther-Lütkens; Anke Keidel; Norbert Michael; Tilman Lamparter; Lars-Oliver Essen; Jon Hughes; Wolfgang Gärtner; Yang Yang; Karsten Heyne; Maria A Mroginski; Peter Hildebrandt
Journal:  Front Mol Biosci       Date:  2015-07-10

9.  NMR chemical shift pattern changed by ammonium sulfate precipitation in cyanobacterial phytochrome Cph1.

Authors:  Chen Song; Christina Lang; Jakub Kopycki; Jon Hughes; Jörg Matysik
Journal:  Front Mol Biosci       Date:  2015-07-28

10.  Ultrafast excited-state dynamics and fluorescence deactivation of near-infrared fluorescent proteins engineered from bacteriophytochromes.

Authors:  Jingyi Zhu; Daria M Shcherbakova; Yusaku Hontani; Vladislav V Verkhusha; John T M Kennis
Journal:  Sci Rep       Date:  2015-08-06       Impact factor: 4.379

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