Literature DB >> 27851937

Bacteriophytochrome Photoisomerization Proceeds Homogeneously Despite Heterogeneity in Ground State.

Cheng Wang1, Moira L Flanagan2, Ryan D McGillicuddy1, Haibin Zheng1, Alan Ruvim Ginzburg1, Xiaojing Yang3, Keith Moffat3, Gregory S Engel4.   

Abstract

Phytochromes are red/far-red photoreceptors that are widely distributed in plants and prokaryotes. Ultrafast photoisomerization of a double bond in a biliverdin cofactor or other linear tetrapyrrole drives their photoactivity, but their photodynamics are only partially understood. Multiexponential dynamics were observed in previous ultrafast spectroscopic studies and were attributed to heterogeneous populations of the pigment-protein complex. In this work, two-dimensional photon echo spectroscopy was applied to study dynamics of the bacteriophytochromes RpBphP2 and PaBphP. Two-dimensional photon echo spectroscopy can simultaneously resolve inhomogeneity in ensembles and fast dynamics by correlating pump wavelength with the emitted signal wavelength. The distribution of absorption and emission energies within the same state indicates an ensemble of heterogeneous protein environments that are spectroscopically distinct. However, the lifetimes of the dynamics are uniform across the ensemble, suggesting a homogeneous model involving sequential intermediates for the initial photodynamics of isomerization.
Copyright © 2016 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 27851937      PMCID: PMC5113153          DOI: 10.1016/j.bpj.2016.10.017

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  48 in total

1.  Real-time tracking of phytochrome's orientational changes during Pr photoisomerization.

Authors:  Yang Yang; Martin Linke; Theodore von Haimberger; Janina Hahn; Ricardo Matute; Leticia González; Peter Schmieder; Karsten Heyne
Journal:  J Am Chem Soc       Date:  2012-01-13       Impact factor: 15.419

2.  Two-dimensional spectroscopy of electronic couplings in photosynthesis.

Authors:  Tobias Brixner; Jens Stenger; Harsha M Vaswani; Minhaeng Cho; Robert E Blankenship; Graham R Fleming
Journal:  Nature       Date:  2005-03-31       Impact factor: 49.962

3.  DETECTION, ASSAY, AND PRELIMINARY PURIFICATION OF THE PIGMENT CONTROLLING PHOTORESPONSIVE DEVELOPMENT OF PLANTS.

Authors:  W L Butler; K H Norris; H W Siegelman; S B Hendricks
Journal:  Proc Natl Acad Sci U S A       Date:  1959-12       Impact factor: 11.205

4.  Formation of the early photoproduct lumi-R of cyanobacterial phytochrome cph1 observed by ultrafast mid-infrared spectroscopy.

Authors:  Jasper J van Thor; Kate L Ronayne; Michael Towrie
Journal:  J Am Chem Soc       Date:  2007-01-10       Impact factor: 15.419

5.  Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion.

Authors:  Xiaojing Yang; Emina A Stojkovic; Jane Kuk; Keith Moffat
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-17       Impact factor: 11.205

6.  Dynamic intracomplex heterogeneity of phytochrome.

Authors:  Jana B Nieder; Marc Brecht; Robert Bittl
Journal:  J Am Chem Soc       Date:  2009-01-14       Impact factor: 15.419

7.  Solving structure in the CP29 light harvesting complex with polarization-phased 2D electronic spectroscopy.

Authors:  Naomi S Ginsberg; Jeffrey A Davis; Matteo Ballottari; Yuan-Chung Cheng; Roberto Bassi; Graham R Fleming
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-14       Impact factor: 11.205

8.  A prokaryotic phytochrome.

Authors:  J Hughes; T Lamparter; F Mittmann; E Hartmann; W Gärtner; A Wilde; T Börner
Journal:  Nature       Date:  1997-04-17       Impact factor: 49.962

9.  Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein.

Authors:  Kanupriya Pande; Christopher D M Hutchison; Gerrit Groenhof; Andy Aquila; Josef S Robinson; Jason Tenboer; Shibom Basu; Sébastien Boutet; Daniel P DePonte; Mengning Liang; Thomas A White; Nadia A Zatsepin; Oleksandr Yefanov; Dmitry Morozov; Dominik Oberthuer; Cornelius Gati; Ganesh Subramanian; Daniel James; Yun Zhao; Jake Koralek; Jennifer Brayshaw; Christopher Kupitz; Chelsie Conrad; Shatabdi Roy-Chowdhury; Jesse D Coe; Markus Metz; Paulraj Lourdu Xavier; Thomas D Grant; Jason E Koglin; Gihan Ketawala; Raimund Fromme; Vukica Šrajer; Robert Henning; John C H Spence; Abbas Ourmazd; Peter Schwander; Uwe Weierstall; Matthias Frank; Petra Fromme; Anton Barty; Henry N Chapman; Keith Moffat; Jasper J van Thor; Marius Schmidt
Journal:  Science       Date:  2016-05-05       Impact factor: 47.728

10.  Dispersion-free continuum two-dimensional electronic spectrometer.

Authors:  Haibin Zheng; Justin R Caram; Peter D Dahlberg; Brian S Rolczynski; Subha Viswanathan; Dmitriy S Dolzhnikov; Amir Khadivi; Dmitri V Talapin; Gregory S Engel
Journal:  Appl Opt       Date:  2014-03-20       Impact factor: 1.980

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  11 in total

1.  The interplay between chromophore and protein determines the extended excited state dynamics in a single-domain phytochrome.

Authors:  Chavdar Slavov; Tobias Fischer; Avishai Barnoy; Heewhan Shin; Aditya G Rao; Christian Wiebeler; Xiaoli Zeng; Yafang Sun; Qianzhao Xu; Alexander Gutt; Kai-Hong Zhao; Wolfgang Gärtner; Xiaojing Yang; Igor Schapiro; Josef Wachtveitl
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-26       Impact factor: 11.205

2.  Elucidation of Primary Events in Bacteriophytochrome Photoreceptors.

Authors:  Andrew M Moran
Journal:  Biophys J       Date:  2016-11-15       Impact factor: 4.033

3.  Membrane-Bound Bacteriophytochrome-Like Complex of Phototrophic Purple Non-Sulfur Bacterium Rhodopseudomonas palustris.

Authors:  O P Serdyuk; L D Smolygina; M S Khristin
Journal:  Dokl Biochem Biophys       Date:  2018-11-05       Impact factor: 0.788

4.  Elucidating the Molecular Mechanism of Ultrafast Pfr-State Photoisomerization in Bathy Bacteriophytochrome PaBphP.

Authors:  Dihao Wang; Yangzhong Qin; Sheng Zhang; Lijuan Wang; Xiaojing Yang; Dongping Zhong
Journal:  J Phys Chem Lett       Date:  2019-10-02       Impact factor: 6.475

5.  A Proposed Method to Obtain Surface Specificity with Pump-Probe and 2D Spectroscopies.

Authors:  Megan K Petti; Joshua S Ostrander; Erin R Birdsall; Miriam Bohlmann Kunz; Zachary T Armstrong; Ariel M Alperstein; Martin T Zanni
Journal:  J Phys Chem A       Date:  2020-04-16       Impact factor: 2.781

6.  Revealing the origin of multiphasic dynamic behaviors in cyanobacteriochrome.

Authors:  Dihao Wang; Xiankun Li; Sheng Zhang; Lijuan Wang; Xiaojing Yang; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-05       Impact factor: 11.205

7.  UV-trained and metal-enhanced fluorescence of biliverdin and biliverdin nanoparticles.

Authors:  Parinaz Fathi; Ayman Roslend; Kritika Mehta; Parikshit Moitra; Kai Zhang; Dipanjan Pan
Journal:  Nanoscale       Date:  2021-03-12       Impact factor: 8.307

8.  Disentanglement of excited-state dynamics with implications for FRET measurements: two-dimensional electronic spectroscopy of a BODIPY-functionalized cavitand.

Authors:  John P Otto; Lili Wang; Igor Pochorovski; Samuel M Blau; Alán Aspuru-Guzik; Zhenan Bao; Gregory S Engel; Melanie Chiu
Journal:  Chem Sci       Date:  2018-03-15       Impact factor: 9.825

9.  Comparative Analysis of Bacteriophytochrome Agp2 and Its Engineered Photoactivatable NIR Fluorescent Proteins PAiRFP1 and PAiRFP2.

Authors:  Faez Iqbal Khan; Fakhrul Hassan; Razique Anwer; Feng Juan; Dakun Lai
Journal:  Biomolecules       Date:  2020-09-07

10.  Effect of the PHY Domain on the Photoisomerization Step of the Forward Pr →Pfr Conversion of a Knotless Phytochrome.

Authors:  Tobias Fischer; Qianzhao Xu; Kai-Hong Zhao; Wolfgang Gärtner; Chavdar Slavov; Josef Wachtveitl
Journal:  Chemistry       Date:  2020-11-27       Impact factor: 5.236

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