Literature DB >> 24135702

DNA topoisomerases beyond the standard role.

Laura Baranello, Fedor Kouzine, David Levens.   

Abstract

Chromatin is dynamically changing its structure to accommodate and control DNA-dependent processes inside of eukaryotic cells. These changes are necessarily linked to changes of DNA topology, which might itself serve as a regulatory signal to be detected by proteins. Thus, DNA Topoisomerases may contribute to the regulation of many events occurring during the transcription cycle. In this review we will focus on DNA Topoisomerase functions in transcription, with particular emphasis on the multiplicity of tasks beyond their widely appreciated role in solving topological problems associated with transcription elongation.

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Year:  2013        PMID: 24135702     DOI: 10.4161/trns.26598

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  18 in total

1.  CTCF and cohesin cooperate to organize the 3D structure of the mammalian genome.

Authors:  Laura Baranello; Fedor Kouzine; David Levens
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-07       Impact factor: 11.205

Review 2.  Controlling gene expression by DNA mechanics: emerging insights and challenges.

Authors:  David Levens; Laura Baranello; Fedor Kouzine
Journal:  Biophys Rev       Date:  2016-11-14

Review 3.  Controlling gene expression by DNA mechanics: emerging insights and challenges.

Authors:  David Levens; Laura Baranello; Fedor Kouzine
Journal:  Biophys Rev       Date:  2016-08-20

Review 4.  DNA topology and transcription.

Authors:  Fedor Kouzine; David Levens; Laura Baranello
Journal:  Nucleus       Date:  2014-04-22       Impact factor: 4.197

5.  Topoisomerase I deficiency causes RNA polymerase II accumulation and increases AID abundance in immunoglobulin variable genes.

Authors:  Robert W Maul; Huseyin Saribasak; Zheng Cao; Patricia J Gearhart
Journal:  DNA Repair (Amst)       Date:  2015-03-18

6.  ChIP bias as a function of cross-linking time.

Authors:  Laura Baranello; Fedor Kouzine; Suzanne Sanford; David Levens
Journal:  Chromosome Res       Date:  2015-12-21       Impact factor: 5.239

7.  MYC assembles and stimulates topoisomerases 1 and 2 in a "topoisome".

Authors:  Subhendu K Das; Vladislav Kuzin; Donald P Cameron; Suzanne Sanford; Rajiv Kumar Jha; Zuqin Nie; Marta Trullols Rosello; Ronald Holewinski; Thorkell Andresson; Jan Wisniewski; Toyoaki Natsume; David H Price; Brian A Lewis; Fedor Kouzine; David Levens; Laura Baranello
Journal:  Mol Cell       Date:  2021-12-09       Impact factor: 17.970

8.  A Novel Inhibitor of Topoisomerase I Is Selectively Toxic for a Subset of Non-Small Cell Lung Cancer Cell Lines.

Authors:  Iryna O Zubovych; Anirudh Sethi; Aditya Kulkarni; Vural Tagal; Michael G Roth
Journal:  Mol Cancer Ther       Date:  2015-12-14       Impact factor: 6.261

9.  Characterization of HelD, an interacting partner of RNA polymerase from Bacillus subtilis.

Authors:  Jana Wiedermannová; Petra Sudzinová; Tomaš Kovaľ; Alžbeta Rabatinová; Hana Šanderova; Olga Ramaniuk; Šimon Rittich; Jan Dohnálek; Zhihui Fu; Petr Halada; Peter Lewis; Libor Krásny
Journal:  Nucleic Acids Res       Date:  2014-02-11       Impact factor: 16.971

10.  DNA break mapping reveals topoisomerase II activity genome-wide.

Authors:  Laura Baranello; Fedor Kouzine; Damian Wojtowicz; Kairong Cui; Teresa M Przytycka; Keji Zhao; David Levens
Journal:  Int J Mol Sci       Date:  2014-07-23       Impact factor: 5.923

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