Literature DB >> 24135425

Clinical application of high-throughput genomic technologies for treatment selection in breast cancer.

Aaron R Hansen, Philippe L Bedard.   

Abstract

Large-scale collaborative initiatives using next-generation DNA sequencing and other high-throughput technologies have begun to characterize the genomic landscape of breast cancer. These landmark studies have identified infrequent driver mutations that are potential targets for therapeutic intervention with approved or investigational drug treatments, among other important discoveries. Recently, many institutions have launched molecular screening programs that apply high-throughput genomic technologies to patients with advanced solid malignancies, including breast cancer, to inform clinical decision-making. This article provides an overview of the recent molecular insights in breast cancer, including potentially actionable somatic alterations, the technological platforms currently available in a clinical diagnostics setting to detect these alterations, and ongoing institutional or regional molecular screening programs in advanced breast cancer.

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Year:  2013        PMID: 24135425      PMCID: PMC3979162          DOI: 10.1186/bcr3558

Source DB:  PubMed          Journal:  Breast Cancer Res        ISSN: 1465-5411            Impact factor:   6.466


  41 in total

1.  Molecular profiling of patients with colorectal cancer and matched targeted therapy in phase I clinical trials.

Authors:  Rodrigo Dienstmann; Danila Serpico; Jordi Rodon; Cristina Saura; Teresa Macarulla; Elena Elez; Maria Alsina; Jaume Capdevila; Jose Perez-Garcia; Gessamí Sánchez-Ollé; Claudia Aura; Ludmila Prudkin; Stefania Landolfi; Javier Hernández-Losa; Ana Vivancos; Josep Tabernero
Journal:  Mol Cancer Ther       Date:  2012-06-21       Impact factor: 6.261

2.  Testing for discordance at metastatic relapse of breast cancer matters.

Authors:  Paul J van Diest; Laurien D C Hoefnagel; Elsken van der Wall
Journal:  J Clin Oncol       Date:  2012-07-16       Impact factor: 44.544

3.  Global mutational profiling of formalin-fixed human colon cancers from a pathology archive.

Authors:  Mark D Adams; Martina L Veigl; Zhenghe Wang; Neil Molyneux; Shuying Sun; Kishore Guda; Xiaoqing Yu; Sanford D Markowitz; Joseph Willis
Journal:  Mod Pathol       Date:  2012-08-10       Impact factor: 7.842

4.  High-throughput oncogene mutation profiling in human cancer.

Authors:  Roman K Thomas; Alissa C Baker; Ralph M Debiasi; Wendy Winckler; Thomas Laframboise; William M Lin; Meng Wang; Whei Feng; Thomas Zander; Laura MacConaill; Laura E Macconnaill; Jeffrey C Lee; Rick Nicoletti; Charlie Hatton; Mary Goyette; Luc Girard; Kuntal Majmudar; Liuda Ziaugra; Kwok-Kin Wong; Stacey Gabriel; Rameen Beroukhim; Michael Peyton; Jordi Barretina; Amit Dutt; Caroline Emery; Heidi Greulich; Kinjal Shah; Hidefumi Sasaki; Adi Gazdar; John Minna; Scott A Armstrong; Ingo K Mellinghoff; F Stephen Hodi; Glenn Dranoff; Paul S Mischel; Tim F Cloughesy; Stan F Nelson; Linda M Liau; Kirsten Mertz; Mark A Rubin; Holger Moch; Massimo Loda; William Catalona; Jonathan Fletcher; Sabina Signoretti; Frederic Kaye; Kenneth C Anderson; George D Demetri; Reinhard Dummer; Stephan Wagner; Meenhard Herlyn; William R Sellers; Matthew Meyerson; Levi A Garraway
Journal:  Nat Genet       Date:  2007-02-11       Impact factor: 38.330

5.  Targeted, high-depth, next-generation sequencing of cancer genes in formalin-fixed, paraffin-embedded and fine-needle aspiration tumor specimens.

Authors:  Andrew G Hadd; Jeff Houghton; Ashish Choudhary; Sachin Sah; Liangjing Chen; Adam C Marko; Tiffany Sanford; Kalyan Buddavarapu; Julie Krosting; Lana Garmire; Dennis Wylie; Rupali Shinde; Sylvie Beaudenon; Erik K Alexander; Elizabeth Mambo; Alex T Adai; Gary J Latham
Journal:  J Mol Diagn       Date:  2013-01-13       Impact factor: 5.568

Review 6.  Next-generation sequencing in the clinic: are we ready?

Authors:  Leslie G Biesecker; Wylie Burke; Isaac Kohane; Sharon E Plon; Ron Zimmern
Journal:  Nat Rev Genet       Date:  2012-11       Impact factor: 53.242

7.  Personalized medicine in a phase I clinical trials program: the MD Anderson Cancer Center initiative.

Authors:  Apostolia-Maria Tsimberidou; Nancy G Iskander; David S Hong; Jennifer J Wheler; Gerald S Falchook; Siqing Fu; Sarina Piha-Paul; Aung Naing; Filip Janku; Rajyalakshmi Luthra; Yang Ye; Sijin Wen; Donald Berry; Razelle Kurzrock
Journal:  Clin Cancer Res       Date:  2012-09-10       Impact factor: 12.531

8.  Feasibility of real time next generation sequencing of cancer genes linked to drug response: results from a clinical trial.

Authors:  Ben Tran; Andrew M K Brown; Philippe L Bedard; Eric Winquist; Glenwood D Goss; Sebastien J Hotte; Stephen A Welch; Hal W Hirte; Tong Zhang; Lincoln D Stein; Vincent Ferretti; Stuart Watt; Wei Jiao; Karen Ng; Sangeet Ghai; Patricia Shaw; Teresa Petrocelli; Thomas J Hudson; Benjamin G Neel; Nicole Onetto; Lillian L Siu; John D McPherson; Suzanne Kamel-Reid; Janet E Dancey
Journal:  Int J Cancer       Date:  2012-10-11       Impact factor: 7.396

9.  Assuring the quality of next-generation sequencing in clinical laboratory practice.

Authors:  Amy S Gargis; Lisa Kalman; Meredith W Berry; David P Bick; David P Dimmock; Tina Hambuch; Fei Lu; Elaine Lyon; Karl V Voelkerding; Barbara A Zehnbauer; Richa Agarwala; Sarah F Bennett; Bin Chen; Ephrem L H Chin; John G Compton; Soma Das; Daniel H Farkas; Matthew J Ferber; Birgit H Funke; Manohar R Furtado; Lilia M Ganova-Raeva; Ute Geigenmüller; Sandra J Gunselman; Madhuri R Hegde; Philip L F Johnson; Andrew Kasarskis; Shashikant Kulkarni; Thomas Lenk; C S Jonathan Liu; Megan Manion; Teri A Manolio; Elaine R Mardis; Jason D Merker; Mangalathu S Rajeevan; Martin G Reese; Heidi L Rehm; Birgitte B Simen; Joanne M Yeakley; Justin M Zook; Ira M Lubin
Journal:  Nat Biotechnol       Date:  2012-11       Impact factor: 54.908

10.  Comprehensive molecular portraits of human breast tumours.

Authors: 
Journal:  Nature       Date:  2012-09-23       Impact factor: 49.962

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  5 in total

1.  Cancer in silico drug discovery: a systems biology tool for identifying candidate drugs to target specific molecular tumor subtypes.

Authors:  F Anthony San Lucas; Jerry Fowler; Kyle Chang; Scott Kopetz; Eduardo Vilar; Paul Scheet
Journal:  Mol Cancer Ther       Date:  2014-10-27       Impact factor: 6.261

Review 2.  Precision Medicine for Continuing Phenotype Expansion of Human Genetic Diseases.

Authors:  Hui Yu; Victor Wei Zhang
Journal:  Biomed Res Int       Date:  2015-06-07       Impact factor: 3.411

3.  A feasibility study of returning clinically actionable somatic genomic alterations identified in a research laboratory.

Authors:  Natalia Paez Arango; Lauren Brusco; Kenna R Mills Shaw; Ken Chen; Agda Karina Eterovic; Vijaykumar Holla; Amber Johnson; Beate Litzenburger; Yekaterina B Khotskaya; Nora Sanchez; Ann Bailey; Xiaofeng Zheng; Chacha Horombe; Scott Kopetz; Carol J Farhangfar; Mark Routbort; Russell Broaddus; Elmer V Bernstam; John Mendelsohn; Gordon B Mills; Funda Meric-Bernstam
Journal:  Oncotarget       Date:  2017-06-27

4.  Analysis of tumor template from multiple compartments in a blood sample provides complementary access to peripheral tumor biomarkers.

Authors:  William M Strauss; Chris Carter; Jill Simmons; Erich Klem; Nathan Goodman; Behrad Vahidi; Juan Romero; Michael Masterman-Smith; Ruth O'Regan; Keerthi Gogineni; Lee Schwartzberg; Laura K Austin; Paul W Dempsey; Massimo Cristofanilli
Journal:  Oncotarget       Date:  2016-05-03

5.  TP53 mutations and protein immunopositivity may predict for poor outcome but also for trastuzumab benefit in patients with early breast cancer treated in the adjuvant setting.

Authors:  George Fountzilas; Eleni Giannoulatou; Zoi Alexopoulou; Flora Zagouri; Eleni Timotheadou; Kyriaki Papadopoulou; Sotiris Lakis; Mattheos Bobos; Christos Poulios; Maria Sotiropoulou; Aggeliki Lyberopoulou; Helen Gogas; George Pentheroudakis; Dimitrios Pectasides; Angelos Koutras; Christos Christodoulou; Christos Papandreou; Epaminontas Samantas; Pavlos Papakostas; Paris Kosmidis; Dimitrios Bafaloukos; Charisios Karanikiotis; Meletios-Athanassios Dimopoulos; Vassiliki Kotoula
Journal:  Oncotarget       Date:  2016-05-31
  5 in total

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