Literature DB >> 23138292

Assuring the quality of next-generation sequencing in clinical laboratory practice.

Amy S Gargis, Lisa Kalman, Meredith W Berry, David P Bick, David P Dimmock, Tina Hambuch, Fei Lu, Elaine Lyon, Karl V Voelkerding, Barbara A Zehnbauer, Richa Agarwala, Sarah F Bennett, Bin Chen, Ephrem L H Chin, John G Compton, Soma Das, Daniel H Farkas, Matthew J Ferber, Birgit H Funke, Manohar R Furtado, Lilia M Ganova-Raeva, Ute Geigenmüller, Sandra J Gunselman, Madhuri R Hegde, Philip L F Johnson, Andrew Kasarskis, Shashikant Kulkarni, Thomas Lenk, C S Jonathan Liu, Megan Manion, Teri A Manolio, Elaine R Mardis, Jason D Merker, Mangalathu S Rajeevan, Martin G Reese, Heidi L Rehm, Birgitte B Simen, Joanne M Yeakley, Justin M Zook, Ira M Lubin.   

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Year:  2012        PMID： 23138292      PMCID： PMC3827024          DOI： 10.1038/nbt.2403

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  1 in total

1.  A map of human genome variation from population-scale sequencing.

Authors:  Gonçalo R Abecasis; David Altshuler; Adam Auton; Lisa D Brooks; Richard M Durbin; Richard A Gibbs; Matt E Hurles; Gil A McVean
Journal:  Nature       Date:  2010-10-28       Impact factor: 49.962
  1 in total
  161 in total

Review 1.  Endorsing good quality assurance practices in molecular pathology: risks and recommendations for diagnostic laboratories and external quality assessment providers.

Authors:  Lien Tembuyser; Elisabeth M C Dequeker
Journal:  Virchows Arch       Date:  2015-08-26       Impact factor: 4.064

2.  Unbiased Detection of Respiratory Viruses by Use of RNA Sequencing-Based Metagenomics: a Systematic Comparison to a Commercial PCR Panel.

Authors:  Erin H Graf; Keith E Simmon; Keith D Tardif; Weston Hymas; Steven Flygare; Karen Eilbeck; Mark Yandell; Robert Schlaberg
Journal:  J Clin Microbiol       Date:  2016-01-27       Impact factor: 5.948

Review 3.  Next-generation sequencing for the diagnosis of hereditary pheochromocytoma and paraganglioma syndromes.

Authors:  Rodrigo A Toledo; Patricia L M Dahia
Journal:  Curr Opin Endocrinol Diabetes Obes       Date:  2015-06       Impact factor: 3.243

Review 4.  Translating next generation sequencing to practice: opportunities and necessary steps.

Authors:  Sitharthan Kamalakaran; Vinay Varadan; Angel Janevski; Nilanjana Banerjee; David Tuck; W Richard McCombie; Nevenka Dimitrova; Lyndsay N Harris
Journal:  Mol Oncol       Date:  2013-05-15       Impact factor: 6.603

5.  Fragmentation of genomic DNA using microwave irradiation.

Authors:  Yu Yang; Jun Hang
Journal:  J Biomol Tech       Date:  2013-07

6.  Validation of a next-generation sequencing assay for clinical molecular oncology.

Authors:  Catherine E Cottrell; Hussam Al-Kateb; Andrew J Bredemeyer; Eric J Duncavage; David H Spencer; Haley J Abel; Christina M Lockwood; Ian S Hagemann; Stephanie M O'Guin; Lauren C Burcea; Christopher S Sawyer; Dayna M Oschwald; Jennifer L Stratman; Dorie A Sher; Mark R Johnson; Justin T Brown; Paul F Cliften; Bijoy George; Leslie D McIntosh; Savita Shrivastava; Tudung T Nguyen; Jacqueline E Payton; Mark A Watson; Seth D Crosby; Richard D Head; Robi D Mitra; Rakesh Nagarajan; Shashikant Kulkarni; Karen Seibert; Herbert W Virgin; Jeffrey Milbrandt; John D Pfeifer
Journal:  J Mol Diagn       Date:  2013-11-06       Impact factor: 5.568

7.  Next-generation sequencing in the clinic.

Authors:  Jason Y Park; Larry J Kricka; Paolo Fortina
Journal:  Nat Biotechnol       Date:  2013-11       Impact factor: 54.908

8.  Validation of an NGS Approach for Diagnostic BRCA1/BRCA2 Mutation Testing.

Authors:  Daniela Dacheva; Rumyana Dodova; Ivan Popov; Teodora Goranova; Atanaska Mitkova; Vanio Mitev; Radka Kaneva
Journal:  Mol Diagn Ther       Date:  2015-04       Impact factor: 4.074

9.  Tumour heterogeneity in the clinic.

Authors:  Philippe L Bedard; Aaron R Hansen; Mark J Ratain; Lillian L Siu
Journal:  Nature       Date:  2013-09-19       Impact factor: 49.962

10.  Good laboratory practice for clinical next-generation sequencing informatics pipelines.

Authors:  Amy S Gargis; Lisa Kalman; David P Bick; Cristina da Silva; David P Dimmock; Birgit H Funke; Sivakumar Gowrisankar; Madhuri R Hegde; Shashikant Kulkarni; Christopher E Mason; Rakesh Nagarajan; Karl V Voelkerding; Elizabeth A Worthey; Nazneen Aziz; John Barnes; Sarah F Bennett; Himani Bisht; Deanna M Church; Zoya Dimitrova; Shaw R Gargis; Nabil Hafez; Tina Hambuch; Fiona C L Hyland; Ruth Ann Luna; Duncan MacCannell; Tobias Mann; Megan R McCluskey; Timothy K McDaniel; Lilia M Ganova-Raeva; Heidi L Rehm; Jeffrey Reid; David S Campo; Richard B Resnick; Perry G Ridge; Marc L Salit; Pavel Skums; Lee-Jun C Wong; Barbara A Zehnbauer; Justin M Zook; Ira M Lubin
Journal:  Nat Biotechnol       Date:  2015-07       Impact factor: 54.908
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