Literature DB >> 24132326

Hymenobacter swuensis sp. nov., a gamma-radiation-resistant bacteria isolated from mountain soil.

Jae-Jin Lee1, Sathiyaraj Srinivasan, Sangyong Lim, Minho Joe, Sang Hee Lee, Shin Ae Kwon, Yoon Jung Kwon, Jin Lee, Jin Ju Choi, Hye Min Lee, Young Kyung Auh, Myung Kyum Kim.   

Abstract

Gram stain-negative and non-motile bacteria, designated as DY53(T) and DY43, were isolated from mountain soil in South Korea prior exposure with 5 kGy gamma radiation. Phylogenetic analysis based on 16S rRNA gene sequence revealed that the strains belonged to the family Cytophagaceae in the class Cytophagia. 16S rRNA gene sequence similarity of strains DY53(T) and DY43 was 100 %. The highest degrees of sequence similarities of strains DY53(T) and DY43 were found with Hymenobacter perfusus A1-12(T) (98.8 %), Hymenobacter rigui WPCB131(T) (98.5 %), H. yonginensis HMD1010(T) (97.9 %), H. xinjiangensis X2-1g(T) (96.6 %), and H. gelipurpurascens Txg1(T) (96.5 %). The DNA G+C content of the novel strains DY53(T) and DY43 were 59.5 mol%. Chemotaxonomic data revealed that strains possessed major fatty acids such as C₁₅:₀ iso, C₁₅:₀ anteiso, C₁₆:₁ ω5c, summed feature 3 (16:1 ω7c/ω6c), summed feature 4 (17:1 anteiso B/iso I) and C₁₇:₀ iso, and major polar lipid was phosphatidylethanolamine. The novel strains showed resistance to gamma radiation, with a D10 value (i.e., the dose required to reduce the bacterial population by tenfold) in excess of 5 kGy. Based on these data, strains DY53(T) and DY43 should be classified as representing a novel species, for which the name Hymenobacter swuensis sp. nov. is proposed, with the type strain DY53(T) (=KCTC 32018(T) = JCM 18582(T)) and DY43 (=KCTC 32010).

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 24132326     DOI: 10.1007/s00284-013-0478-3

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  14 in total

1.  Extensive diversity of ionizing-radiation-resistant bacteria recovered from Sonoran Desert soil and description of nine new species of the genus Deinococcus obtained from a single soil sample.

Authors:  Fred A Rainey; Keren Ray; Margarida Ferreira; Bridget Z Gatz; M Fernanda Nobre; Danielle Bagaley; Brian A Rash; Mie-Jung Park; Ashlee M Earl; Nicole C Shank; Alanna M Small; Margaret C Henk; John R Battista; Peter Kämpfer; Milton S da Costa
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

2.  16S ribosomal DNA amplification for phylogenetic study.

Authors:  W G Weisburg; S M Barns; D A Pelletier; D J Lane
Journal:  J Bacteriol       Date:  1991-01       Impact factor: 3.490

3.  Hymenobacter roseosalivarius gen. nov., sp. nov. from continental Antartica soils and sandstone: bacteria of the Cytophaga/Flavobacterium/Bacteroides line of phylogenetic descent.

Authors:  P Hirsch; W Ludwig; C Hethke; M Sittig; B Hoffmann; C A Gallikowski
Journal:  Syst Appl Microbiol       Date:  1998-08       Impact factor: 4.022

4.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

5.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

6.  Hymenobacter perfusus sp. nov., Hymenobacter flocculans sp. nov. and Hymenobacter metalli sp. nov. three new species isolated from an uranium mine waste water treatment system.

Authors:  Ana Paula Chung; André Lopes; M Fernanda Nobre; Paula V Morais
Journal:  Syst Appl Microbiol       Date:  2010-11-03       Impact factor: 4.022

7.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

8.  Hymenobacter yonginensis sp. nov., isolated from a mesotrophic artificial lake.

Authors:  Yochan Joung; Sung-Heun Cho; Haneul Kim; Seung Bum Kim; Kiseong Joh
Journal:  Int J Syst Evol Microbiol       Date:  2010-07-23       Impact factor: 2.747

9.  Hymenobacter rigui sp. nov., isolated from wetland freshwater.

Authors:  Keun Sik Baik; Chi Nam Seong; Eun Young Moon; Yoon-Dong Park; Hana Yi; Jongsik Chun
Journal:  Int J Syst Evol Microbiol       Date:  2006-09       Impact factor: 2.747

10.  Adhaeribacter terreus sp. nov., isolated from forest soil.

Authors:  Jia-Yue Zhang; Xing-Yu Liu; Shuang-Jiang Liu
Journal:  Int J Syst Evol Microbiol       Date:  2009-06-19       Impact factor: 2.747

View more
  5 in total

1.  Radiation-Resistant Micrococcus luteus SC1204 and Its Proteomics Change Upon Gamma Irradiation.

Authors:  Wuyuan Deng; Yang Yang; Peng Gao; Hao Chen; Wenting Wen; Qun Sun
Journal:  Curr Microbiol       Date:  2016-02-26       Impact factor: 2.188

2.  Biological Ice-Nucleating Particles Deposited Year-Round in Subtropical Precipitation.

Authors:  Rachel E Joyce; Heather Lavender; Jennifer Farrar; Jason T Werth; Carolyn F Weber; Juliana D'Andrilli; Mickaël Vaitilingom; Brent C Christner
Journal:  Appl Environ Microbiol       Date:  2019-11-14       Impact factor: 4.792

3.  Community Ecology of Deinococcus in Irradiated Soil.

Authors:  Matthew Chidozie Ogwu; Sathiyaraj Srinivasan; Ke Dong; Dhamodharan Ramasamy; Bruce Waldman; Jonathan M Adams
Journal:  Microb Ecol       Date:  2019-04-12       Impact factor: 4.552

4.  Hymenobacter puniceus sp. nov., radiation resistant bacteria isolated from soil in South Korea.

Authors:  Yuna Park; Soohyun Maeng; Tuvshinzaya Damdintogtokh; Minji Bang; Hyejin Oh; Sathiyaraj Srinivasan; Myung Kyum Kim
Journal:  Antonie Van Leeuwenhoek       Date:  2021-08-03       Impact factor: 2.271

5.  Draft Genome Sequence of Hymenobacter sp. Strain AT01-02, Isolated from a Surface Soil Sample in the Atacama Desert, Chile.

Authors:  Anders Cai Holm Hansen; Ivan Glaucio Paulino-Lima; Kosuke Fujishima; Lynn Justine Rothschild; Peter Ruhdal Jensen
Journal:  Genome Announc       Date:  2016-02-11
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.