Literature DB >> 24126320

Tailoring the hydrophobicity of graphene for its use as nanopores for DNA translocation.

Grégory F Schneider1, Qiang Xu, Susanne Hage, Stephanie Luik, Johannes N H Spoor, Sairam Malladi, Henny Zandbergen, Cees Dekker.   

Abstract

Graphene nanopores are potential successors to biological and silicon-based nanopores. For sensing applications, it is however crucial to understand and block the strong nonspecific hydrophobic interactions between DNA and graphene. Here we demonstrate a novel scheme to prevent DNA-graphene interactions, based on a tailored self-assembled monolayer. For bare graphene, we encounter a paradox: whereas contaminated graphene nanopores facilitated DNA translocation well, clean crystalline graphene pores very quickly exhibit clogging of the pore. We attribute this to strong interactions between DNA nucleotides and graphene, yielding sticking and irreversible pore closure. We develop a general strategy to noncovalently tailor the hydrophobic surface of graphene by designing a dedicated self-assembled monolayer of pyrene ethylene glycol, which renders the surface hydrophilic. We demonstrate that this prevents DNA to adsorb on graphene and show that single-stranded DNA can now be detected in graphene nanopores with excellent nanopore durability and reproducibility.

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Year:  2013        PMID: 24126320     DOI: 10.1038/ncomms3619

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  36 in total

1.  Maxwell-Hall access resistance in graphene nanopores.

Authors:  Subin Sahu; Michael Zwolak
Journal:  Phys Chem Chem Phys       Date:  2018-02-14       Impact factor: 3.676

2.  Electrical pulse fabrication of graphene nanopores in electrolyte solution.

Authors:  Aaron T Kuan; Bo Lu; Ping Xie; Tamas Szalay; Jene A Golovchenko
Journal:  Appl Phys Lett       Date:  2015-05-22       Impact factor: 3.791

Review 3.  Nanopore Sensing.

Authors:  Wenqing Shi; Alicia K Friedman; Lane A Baker
Journal:  Anal Chem       Date:  2016-11-18       Impact factor: 6.986

4.  DNA sequence-dependent ionic currents in ultra-small solid-state nanopores.

Authors:  Jeffrey Comer; Aleksei Aksimentiev
Journal:  Nanoscale       Date:  2016-05-05       Impact factor: 7.790

5.  Graphene Nanopores for Protein Sequencing.

Authors:  James Wilson; Leila Sloman; Zhiren He; Aleksei Aksimentiev
Journal:  Adv Funct Mater       Date:  2016-06-09       Impact factor: 18.808

6.  Modulation of Molecular Flux Using a Graphene Nanopore Capacitor.

Authors:  Manish Shankla; Aleksei Aksimentiev
Journal:  J Phys Chem B       Date:  2017-01-17       Impact factor: 2.991

7.  Colloquium: Ionic phenomena in nanoscale pores through 2D materials.

Authors:  Subin Sahu; Michael Zwolak
Journal:  Rev Mod Phys       Date:  2019       Impact factor: 54.494

8.  Slowing DNA Transport Using Graphene-DNA Interactions.

Authors:  Shouvik Banerjee; James Wilson; Jiwook Shim; Manish Shankla; Elise A Corbin; Aleksei Aksimentiev; Rashid Bashir
Journal:  Adv Funct Mater       Date:  2015-02-11       Impact factor: 18.808

9.  Lithography-based fabrication of nanopore arrays in freestanding SiN and graphene membranes.

Authors:  Daniel V Verschueren; Wayne Yang; Cees Dekker
Journal:  Nanotechnology       Date:  2018-04-06       Impact factor: 3.874

10.  Step-defect guided delivery of DNA to a graphene nanopore.

Authors:  Manish Shankla; Aleksei Aksimentiev
Journal:  Nat Nanotechnol       Date:  2019-08-05       Impact factor: 39.213

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