Literature DB >> 20827584

Regulatory regions in DNA: promoters, enhancers, silencers, and insulators.

Jean-Jack M Riethoven1.   

Abstract

One of the mechanisms through which protein levels in the cell are controlled is through transcriptional regulation. Certain regions, called cis-regulatory elements, on the DNA are footprints for the trans-acting proteins involved in transcription, either for the positioning of the basic transcriptional machinery or for the regulation - in simple terms turn on or turn off - thereof. The basic transcriptional machinery is DNA-dependent RNA polymerase (RNAP) which synthesizes various types of RNA and core promoters on the DNA are used to position the RNAP. Other nearby regions will regulate the transcription: in prokaryotic organisms operators are involved; in eukaryotic organisms, proximal promoter regions, enhancers, silencers, and insulators are present. This chapter will describe the various DNA regions involved in transcription and transcriptional regulation.

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Year:  2010        PMID: 20827584     DOI: 10.1007/978-1-60761-854-6_3

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  29 in total

Review 1.  Metazoan promoters: emerging characteristics and insights into transcriptional regulation.

Authors:  Boris Lenhard; Albin Sandelin; Piero Carninci
Journal:  Nat Rev Genet       Date:  2012-03-06       Impact factor: 53.242

Review 2.  Plant promoters: an approach of structure and function.

Authors:  Milena Silva Porto; Morganna Pollynne Nóbrega Pinheiro; Vandré Guevara Lyra Batista; Roseane Cavalcanti dos Santos; Péricles de Albuquerque Melo Filho; Liziane Maria de Lima
Journal:  Mol Biotechnol       Date:  2014-01       Impact factor: 2.695

3.  Machine Learning for Integrating Data in Biology and Medicine: Principles, Practice, and Opportunities.

Authors:  Marinka Zitnik; Francis Nguyen; Bo Wang; Jure Leskovec; Anna Goldenberg; Michael M Hoffman
Journal:  Inf Fusion       Date:  2018-09-21       Impact factor: 12.975

4.  Osmolality/salinity-responsive enhancers (OSREs) control induction of osmoprotective genes in euryhaline fish.

Authors:  Xiaodan Wang; Dietmar Kültz
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-13       Impact factor: 11.205

5.  Protein kinase C (PKC) delta suppresses keratinocyte proliferation by increasing p21(Cip1) level by a KLF4 transcription factor-dependent mechanism.

Authors:  Yap Ching Chew; Gautam Adhikary; Gerald M Wilson; E Albert Reece; Richard L Eckert
Journal:  J Biol Chem       Date:  2011-06-07       Impact factor: 5.157

Review 6.  Innovative Molecular Testing Strategies for Adjunctive Investigations in Hemostasis and Thrombosis.

Authors:  Elham Ghorbanpour; David Lillicrap
Journal:  Semin Thromb Hemost       Date:  2019-08-12       Impact factor: 4.180

Review 7.  A review of therapeutic prospects of non-viral gene therapy in the retinal pigment epithelium.

Authors:  Adarsha Koirala; Shannon M Conley; Muna I Naash
Journal:  Biomaterials       Date:  2013-06-22       Impact factor: 12.479

Review 8.  Enhancers as information integration hubs in development: lessons from genomics.

Authors:  Christa Buecker; Joanna Wysocka
Journal:  Trends Genet       Date:  2012-04-07       Impact factor: 11.639

Review 9.  The regulation of gene expression in hair cells.

Authors:  Allen F Ryan; Ryoukichi Ikeda; Masatsugu Masuda
Journal:  Hear Res       Date:  2015-01-21       Impact factor: 3.208

10.  Functional Conservation of a Developmental Switch in Mammals since the Jurassic Age.

Authors:  Jayati Mookerjee-Basu; Xiang Hua; Lu Ge; Emmanuelle Nicolas; Qin Li; Philip Czyzewicz; Dai Zhongping; Suraj Peri; Juan I FuxmanBass; Albertha J M Walhout; Dietmar J Kappes
Journal:  Mol Biol Evol       Date:  2019-01-01       Impact factor: 16.240

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