Literature DB >> 11818130

Regulatory context is a crucial part of gene function.

Sabine Fessele1, Holger Maier, Christian Zischek, Peter J Nelson, Thomas Werner.   

Abstract

Information about the time and place of gene transcription, which until recently was only possible by extensive experimental analysis, can now be predicted through in silico analysis. Using the human RANTES/CCL5 promoter, we show that organizational features of promoters derived from promoter sequences contain information about the spatial and temporal 'functional context' of expression.

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Year:  2002        PMID： 11818130     DOI： 10.1016/s0168-9525(02)02591-x

Source DB:  PubMed          Journal:  Trends Genet        ISSN： 0168-9525            Impact factor:   11.639


  32 in total

1.  Transcriptional regulation of protein complexes and biological pathways.

Authors:  Sridhar Hannenhalli; Samuel Levy
Journal:  Mamm Genome       Date:  2003-09       Impact factor: 2.957

Review 2.  Macrophage-specific gene expression: current paradigms and future challenges.

Authors:  David R Greaves; Siamon Gordon
Journal:  Int J Hematol       Date:  2002-07       Impact factor: 2.490

3.  MATCH: A tool for searching transcription factor binding sites in DNA sequences.

Authors:  A E Kel; E Gössling; I Reuter; E Cheremushkin; O V Kel-Margoulis; E Wingender
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

Review 4.  Computational approaches to identify promoters and cis-regulatory elements in plant genomes.

Authors:  Stephane Rombauts; Kobe Florquin; Magali Lescot; Kathleen Marchal; Pierre Rouzé; Yves van de Peer
Journal:  Plant Physiol       Date:  2003-07       Impact factor: 8.340

Review 5.  Synthetic promoters in planta.

Authors:  Nrisingha Dey; Shayan Sarkar; Sefali Acharya; Indu B Maiti
Journal:  Planta       Date:  2015-08-07       Impact factor: 4.116

Review 6.  Plant promoters: an approach of structure and function.

Authors:  Milena Silva Porto; Morganna Pollynne Nóbrega Pinheiro; Vandré Guevara Lyra Batista; Roseane Cavalcanti dos Santos; Péricles de Albuquerque Melo Filho; Liziane Maria de Lima
Journal:  Mol Biotechnol       Date:  2014-01       Impact factor: 2.695

7.  Integrative biology identifies shared transcriptional networks in CKD.

Authors:  Sebastian Martini; Viji Nair; Benjamin J Keller; Felix Eichinger; Jennifer J Hawkins; Ann Randolph; Carsten A Böger; Crystal A Gadegbeku; Caroline S Fox; Clemens D Cohen; Matthias Kretzler
Journal:  J Am Soc Nephrol       Date:  2014-06-12       Impact factor: 10.121

8.  Comparative promoter analysis allows de novo identification of specialized cell junction-associated proteins.

Authors:  Clemens D Cohen; Andreas Klingenhoff; Anissa Boucherot; Almut Nitsche; Anna Henger; Bodo Brunner; Holger Schmid; Monika Merkle; Moin A Saleem; Klaus-Peter Koller; Thomas Werner; Hermann-Josef Gröne; Peter J Nelson; Matthias Kretzler
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-31       Impact factor: 11.205

9.  Heart-specific genes revealed by expressed sequence tag (EST) sampling.

Authors:  Karine Mégy; Stéphane Audic; Jean-Michel Claverie
Journal:  Genome Biol       Date:  2002-11-25       Impact factor: 13.583

10.  Integrative Genomics Identifies Novel Associations with APOL1 Risk Genotypes in Black NEPTUNE Subjects.

Authors:  Matthew G Sampson; Catherine C Robertson; Sebastian Martini; Laura H Mariani; Kevin V Lemley; Christopher E Gillies; Edgar A Otto; Jeffrey B Kopp; Anne Randolph; Virginia Vega-Warner; Felix Eichinger; Viji Nair; Debbie S Gipson; Daniel C Cattran; Duncan B Johnstone; John F O'Toole; Serena M Bagnasco; Peter X Song; Laura Barisoni; Jonathan P Troost; Matthias Kretzler; John R Sedor
Journal:  J Am Soc Nephrol       Date:  2015-07-06       Impact factor: 10.121
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