Literature DB >> 24121043

Aspartate aminotransferase: an old dog teaches new tricks.

Michael D Toney1.   

Abstract

Aspartate aminotransferase (AAT) is a prototypical pyridoxal 5'-phosphate (PLP) dependent enzyme that catalyzes the reversible interconversion of l-aspartate and α-ketoglutarate with oxalacetate and l-glutamate via a ping-pong catalytic cycle in which the pyridoxamine 5'-phosphate enzyme form is an intermediate. There is a bountiful literature on AAT that spans approximately 60years, and much fundamental mechanistic information on PLP dependent reactions has been gained from its study. Here, we review our recent work on AAT, where we again used it as a test bed for fundamental concepts in PLP chemistry. First, we discuss the role that coenzyme protonation state plays in controlling reaction specificity, then ground state destabilization via hyperconjugation in the external aldimine intermediate is examined. The third topic is light enhancement of catalysis of Cα-H deprotonation by PLP in solution and in AAT, which occurs through a triplet state of the external aldimine intermediate. Lastly, we consider recent advances in our analyses of enzyme multiple sequence alignments for the purpose of predicting mutations that are required to interconvert structurally similar but catalytically distinct enzymes, and the application of our program JANUS to the conversion of AAT into tyrosine aminotransferase.
Copyright © 2013 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Asparate aminotransferase; Binding isotope effect; Bioinformatics; Coenzyme analogue; Light activation; Nitrogen metabolism; Pyridoxal phosphate; Vitamin B6

Mesh:

Substances:

Year:  2013        PMID: 24121043      PMCID: PMC3946379          DOI: 10.1016/j.abb.2013.10.002

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  77 in total

Review 1.  The manifold of vitamin B6 dependent enzymes.

Authors:  G Schneider; H Käck; Y Lindqvist
Journal:  Structure       Date:  2000-01-15       Impact factor: 5.006

Review 2.  The molecular evolution of pyridoxal-5'-phosphate-dependent enzymes.

Authors:  P K Mehta; P Christen
Journal:  Adv Enzymol Relat Areas Mol Biol       Date:  2000

3.  Analysis of the pH- and ligand-induced spectral transitions of tryptophanase: activation of the coenzyme at the early steps of the catalytic cycle.

Authors:  H Ikushiro; H Hayashi; Y Kawata; H Kagamiyama
Journal:  Biochemistry       Date:  1998-03-03       Impact factor: 3.162

4.  Strain is more important than electrostatic interaction in controlling the pKa of the catalytic group in aspartate aminotransferase.

Authors:  H Mizuguchi; H Hayashi; K Okada; I Miyahara; K Hirotsu; H Kagamiyama
Journal:  Biochemistry       Date:  2001-01-16       Impact factor: 3.162

5.  The substrate activation process in the catalytic reaction of Escherichia coli aromatic amino acid aminotransferase.

Authors:  M M Islam; H Hayashi; H Mizuguchi; H Kagamiyama
Journal:  Biochemistry       Date:  2000-12-19       Impact factor: 3.162

6.  A continuous coupled spectrophotometric assay for tyrosine aminotransferase activity with aromatic and other nonpolar amino acids.

Authors:  T N Luong; J F Kirsch
Journal:  Anal Biochem       Date:  1997-11-01       Impact factor: 3.365

7.  Role of arginine-292 in the substrate specificity of aspartate aminotransferase as examined by site-directed mutagenesis.

Authors:  C N Cronin; J F Kirsch
Journal:  Biochemistry       Date:  1988-06-14       Impact factor: 3.162

8.  Rapid photodynamics of vitamin B6 coenzyme pyridoxal 5'-phosphate and its Schiff bases in solution.

Authors:  Melissa P Hill; Elizabeth C Carroll; Michael D Toney; Delmar S Larsen
Journal:  J Phys Chem B       Date:  2008-04-17       Impact factor: 2.991

9.  NMR studies of solvent-assisted proton transfer in a biologically relevant Schiff base: toward a distinction of geometric and equilibrium H-bond isotope effects.

Authors:  Shasad Sharif; Gleb S Denisov; Michael D Toney; Hans-Heinrich Limbach
Journal:  J Am Chem Soc       Date:  2006-03-15       Impact factor: 15.419

10.  Three-dimensional structure of a pyridoxal-phosphate-dependent enzyme, mitochondrial aspartate aminotransferase.

Authors:  G C Ford; G Eichele; J N Jansonius
Journal:  Proc Natl Acad Sci U S A       Date:  1980-05       Impact factor: 11.205

View more
  32 in total

1.  Ambient Ionization Mass Spectrometry Measurement of Aminotransferase Activity.

Authors:  Xin Yan; Xin Li; Chengsen Zhang; Yang Xu; R Graham Cooks
Journal:  J Am Soc Mass Spectrom       Date:  2017-01-31       Impact factor: 3.109

2.  The three-dimensional structure of NeoB: An aminotransferase involved in the biosynthesis of neomycin.

Authors:  Garrett T Dow; James B Thoden; Hazel M Holden
Journal:  Protein Sci       Date:  2018-04-02       Impact factor: 6.725

3.  Direct evidence that an extended hydrogen-bonding network influences activation of pyridoxal 5'-phosphate in aspartate aminotransferase.

Authors:  Steven Dajnowicz; Jerry M Parks; Xiche Hu; Korie Gesler; Andrey Y Kovalevsky; Timothy C Mueser
Journal:  J Biol Chem       Date:  2017-02-23       Impact factor: 5.157

Review 4.  Aromatic L-amino acid decarboxylases: mechanistic features and microbial applications.

Authors:  Sang-Woo Han; Jong-Shik Shin
Journal:  Appl Microbiol Biotechnol       Date:  2022-06-28       Impact factor: 4.813

Review 5.  Long Noncoding RNAs in Host-Pathogen Interactions.

Authors:  Federica Agliano; Vijay A Rathinam; Andrei E Medvedev; Sivapriya Kailasan Vanaja; Anthony T Vella
Journal:  Trends Immunol       Date:  2019-04-30       Impact factor: 16.687

6.  The Mycobacterium tuberculosis complex has a pathway for the biosynthesis of 4-formamido-4,6-dideoxy-d-glucose.

Authors:  Haley A Brown; Evgeny Vinogradov; Michel Gilbert; Hazel M Holden
Journal:  Protein Sci       Date:  2018-07-18       Impact factor: 6.725

7.  An Essential Role of the Mitochondrial Electron Transport Chain in Cell Proliferation Is to Enable Aspartate Synthesis.

Authors:  Kıvanç Birsoy; Tim Wang; Walter W Chen; Elizaveta Freinkman; Monther Abu-Remaileh; David M Sabatini
Journal:  Cell       Date:  2015-07-30       Impact factor: 41.582

8.  Phylobiochemical characterization of class-Ib aspartate/prephenate aminotransferases reveals evolution of the plant arogenate phenylalanine pathway.

Authors:  Camilla Dornfeld; Alexandra J Weisberg; Ritesh K C; Natalia Dudareva; John G Jelesko; Hiroshi A Maeda
Journal:  Plant Cell       Date:  2014-07-28       Impact factor: 11.277

9.  Theoretical and Mechanistic Validation of Global Kinetic Parameters of the Inactivation of GABA Aminotransferase by OV329 and CPP-115.

Authors:  Pathum M Weerawarna; Matthew J Moschitto; Richard B Silverman
Journal:  ACS Chem Biol       Date:  2021-03-18       Impact factor: 5.100

10.  Aerobic bacterial methane synthesis.

Authors:  Qian Wang; Abdullah Alowaifeer; Patricia Kerner; Narayanaganesh Balasubramanian; Angela Patterson; William Christian; Angela Tarver; John E Dore; Roland Hatzenpichler; Brian Bothner; Timothy R McDermott
Journal:  Proc Natl Acad Sci U S A       Date:  2021-07-06       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.