Literature DB >> 16522119

NMR studies of solvent-assisted proton transfer in a biologically relevant Schiff base: toward a distinction of geometric and equilibrium H-bond isotope effects.

Shasad Sharif1, Gleb S Denisov, Michael D Toney, Hans-Heinrich Limbach.   

Abstract

The tautomeric equilibrium in a Schiff base, N-(3,5-dibromosalicylidene)-methylamine 1, a model for the hydrogen bonded structure of the cofactor pyridoxal-5'-phosphate PLP which is located in the active site of the enzyme, was measured by means of 1H and 15N NMR and deuterium isotope effects on 15N chemical shifts at variable temperature and in different organic solvents. The position of the equilibrium was estimated using the one-bond 1J(OHN) and vicinal 3J(H(alpha)CNH) scalar coupling constants. Additionally, DFT calculations of a series of Schiff bases, N-(R1-salicylidene)-alkyl(R2)amines, were performed to obtain the hydrogen bond geometries. The latter made it possible to investigate a broad range of equilibrium positions. The increase of the polarity of the aprotic solvent shifts the proton in the intramolecular OHN hydrogen bond closer to the nitrogen. The addition of methanol and of hexafluoro-2-propanol to 1 in aprotic solvents models the PLP-water interaction in the enzymatic active site. The alcohols, which vary in acidity and change the polarity around the hydrogen bond, also stabilize the equilibrium, so that the proton is shifted to the nitrogen.

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Year:  2006        PMID: 16522119     DOI: 10.1021/ja056251v

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

1.  Syntheses and structural studies of Schiff bases involving hydrogen bonds.

Authors:  Almudena Perona; Dionisia Sanz; Rosa M Claramunt; José Elguero
Journal:  Molecules       Date:  2006-06-21       Impact factor: 4.411

Review 2.  Aspartate aminotransferase: an old dog teaches new tricks.

Authors:  Michael D Toney
Journal:  Arch Biochem Biophys       Date:  2013-10-09       Impact factor: 4.013

3.  Recent developments in the methods and applications of the bond valence model.

Authors:  Ian David Brown
Journal:  Chem Rev       Date:  2009-12       Impact factor: 60.622

Review 4.  Molecular dynamics simulations of the intramolecular proton transfer and carbanion stabilization in the pyridoxal 5'-phosphate dependent enzymes L-dopa decarboxylase and alanine racemase.

Authors:  Yen-Lin Lin; Jiali Gao; Amir Rubinstein; Dan Thomas Major
Journal:  Biochim Biophys Acta       Date:  2011-05-10

5.  Kinetic isotope effects of L-Dopa decarboxylase.

Authors:  Yen-lin Lin; Jiali Gao
Journal:  J Am Chem Soc       Date:  2011-03-02       Impact factor: 15.419

6.  Intrinsic proton-donating power of zinc-bound water in a carbonic anhydrase active site model estimated by NMR.

Authors:  Stepan B Lesnichin; Ilya G Shenderovich; Titin Muljati; David Silverman; Hans-Heinrich Limbach
Journal:  J Am Chem Soc       Date:  2011-07-01       Impact factor: 15.419

7.  Internal proton transfer in the external pyridoxal 5'-phosphate Schiff base in dopa decarboxylase.

Authors:  Yen-lin Lin; Jiali Gao
Journal:  Biochemistry       Date:  2010-01-12       Impact factor: 3.162

Review 8.  Isotope effects on chemical shifts in the study of intramolecular hydrogen bonds.

Authors:  Poul Erik Hansen
Journal:  Molecules       Date:  2015-01-30       Impact factor: 4.411

9.  H/D Isotope Effects on 1H-NMR Chemical Shifts in Cyclic Heterodimers and Heterotrimers of Phosphinic and Phosphoric Acids.

Authors:  Valeriia V Mulloyarova; Daria O Ustimchuk; Aleksander Filarowski; Peter M Tolstoy
Journal:  Molecules       Date:  2020-04-20       Impact factor: 4.411

10.  Observation and Kinetic Characterization of Transient Schiff Base Intermediates by CEST NMR Spectroscopy.

Authors:  Venkatraman Ramanujam; Cyril Charlier; Ad Bax
Journal:  Angew Chem Int Ed Engl       Date:  2019-09-17       Impact factor: 16.823

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