Literature DB >> 24111616

Glycomic analysis by glycoprotein immobilization for glycan extraction and liquid chromatography on microfluidic chip.

Shuang Yang1, Shadi Toghi Eshghi, Hanching Chiu, Don L DeVoe, Hui Zhang.   

Abstract

Glycosylation is one of the most common protein modifications and profoundly regulates many biological processes. Aberrant glycosylation is reported to associate with diseases such as cancers, human immunodeficiency virus, and immune disorders. It is considerably important to study protein glycosylation and the associated glycans for diagnostics and disease prognostics. Unlike other protein modifications, glycans attached to proteins are enormously complex. Therefore, the comprehensive analysis of glycans from biological or clinical samples is an unmet technical challenge. Development of the high-throughput method will facilitate the glycomics analysis. In this study, we developed a novel method for the high-throughput analysis of N-glycans from glycoproteins using glycoprotein immobilization for glycan extraction (GIG) coupled with liquid chromatography (LC) in an integrated microfluidic platform (chipLC). The separated glycans were then analyzed by mass spectrometry. Briefly, proteins were first immobilized on a solid support. Glycans on immobilized glycoproteins were modified on solid phase to increase the detection and structure analysis. N-Glycans were then enzymatically released and subsequentially separated by porous graphitized carbon particles packed in the same device. By applying the GIG-chipLC for glycomic analysis of human sera, we identified N-glycans with 148 distinct N-glycan masses. The platform was used to analyze N-glycans from mouse heart tissue and serum. The extracted N-glycans from tissues indicated that unique unsialylated N-glycans were detected in tissues that were missing from the proximal or distal serum, whereas common N-glycans from tissues and serum have mature and sialylated structures. The GIG-chipLC provides a simple and robust platform for glycomic analysis of complex biological and clinical samples.

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Year:  2013        PMID: 24111616      PMCID: PMC3867136          DOI: 10.1021/ac4013013

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  54 in total

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Review 2.  Glycomics: an integrated systems approach to structure-function relationships of glycans.

Authors:  Rahul Raman; S Raguram; Ganesh Venkataraman; James C Paulson; Ram Sasisekharan
Journal:  Nat Methods       Date:  2005-11       Impact factor: 28.547

3.  Alterations in the serum glycome due to metastatic prostate cancer.

Authors:  Zuzana Kyselova; Yehia Mechref; Mohammad M Al Bataineh; Lacey E Dobrolecki; Robert J Hickey; Jake Vinson; Christopher J Sweeney; Milos V Novotny
Journal:  J Proteome Res       Date:  2007-04-14       Impact factor: 4.466

4.  Printed covalent glycan array for ligand profiling of diverse glycan binding proteins.

Authors:  Ola Blixt; Steve Head; Tony Mondala; Christopher Scanlan; Margaret E Huflejt; Richard Alvarez; Marian C Bryan; Fabio Fazio; Daniel Calarese; James Stevens; Nahid Razi; David J Stevens; John J Skehel; Irma van Die; Dennis R Burton; Ian A Wilson; Richard Cummings; Nicolai Bovin; Chi-Huey Wong; James C Paulson
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-24       Impact factor: 11.205

5.  Size-selective enrichment of N-linked glycans using highly ordered mesoporous carbon material and detection by MALDI-TOF MS.

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Journal:  Anal Chem       Date:  2011-09-20       Impact factor: 6.986

6.  Simultaneous microanalysis of N-linked oligosaccharides in a glycoprotein using microbore graphitized carbon column liquid chromatography-mass spectrometry.

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Journal:  J Chromatogr A       Date:  2002-08-30       Impact factor: 4.759

7.  Mass spectrometric analysis of sialylated glycans with use of solid-phase labeling of sialic acids.

Authors:  Punit Shah; Shuang Yang; Shisheng Sun; Paul Aiyetan; Kevin J Yarema; Hui Zhang
Journal:  Anal Chem       Date:  2013-03-18       Impact factor: 6.986

8.  Polyacrylamide gel plugs enabling 2-D microfluidic protein separations via isoelectric focusing and multiplexed sodium dodecyl sulfate gel electrophoresis.

Authors:  Jikun Liu; Shuang Yang; Cheng S Lee; Don L DeVoe
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Review 10.  N-linked oligosaccharides as outfitters for glycoprotein folding, form and function.

Authors:  Nivedita Mitra; Sharmistha Sinha; Thirumalai N C Ramya; Avadhesha Surolia
Journal:  Trends Biochem Sci       Date:  2006-02-10       Impact factor: 13.807

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  12 in total

1.  On-chip lectin microarray for glycoprofiling of different gastritis types and gastric cancer.

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Journal:  Biomicrofluidics       Date:  2014-06-06       Impact factor: 2.800

Review 2.  Recent Advances in the Analysis of Complex Glycoproteins.

Authors:  Stefan Gaunitz; Gabe Nagy; Nicola L B Pohl; Milos V Novotny
Journal:  Anal Chem       Date:  2016-11-23       Impact factor: 6.986

3.  Advances in and prospects of microchip liquid chromatography.

Authors:  James P Grinias; Robert T Kennedy
Journal:  Trends Analyt Chem       Date:  2016 Jul-Aug       Impact factor: 12.296

Review 4.  Chemoenzymatic method for glycomics: Isolation, identification, and quantitation.

Authors:  Shuang Yang; Abigail Rubin; Shadi Toghi Eshghi; Hui Zhang
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5.  Integrated glycoprotein immobilization method for glycopeptide and glycan analysis of cardiac hypertrophy.

Authors:  Shuang Yang; Sumita Mishra; Lijun Chen; Jian-Ying Zhou; Daniel W Chan; Subroto Chatterjee; Hui Zhang
Journal:  Anal Chem       Date:  2015-10-06       Impact factor: 6.986

6.  Glycomic analysis of glycans released from glycoproteins using chemical immobilization and mass spectrometry.

Authors:  Shuang Yang; Hui Zhang
Journal:  Curr Protoc Chem Biol       Date:  2014-09-09

7.  A Multichannel Biosensor for Rapid Determination of Cell Surface Glycomic Signatures.

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Journal:  ACS Cent Sci       Date:  2015-06-08       Impact factor: 14.553

8.  Imaging of N-linked glycans from formalin-fixed paraffin-embedded tissue sections using MALDI mass spectrometry.

Authors:  Shadi Toghi Eshghi; Shuang Yang; Xiangchun Wang; Punit Shah; Xingde Li; Hui Zhang
Journal:  ACS Chem Biol       Date:  2014-07-30       Impact factor: 5.100

9.  Simultaneous analyses of N-linked and O-linked glycans of ovarian cancer cells using solid-phase chemoenzymatic method.

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Journal:  Clin Proteomics       Date:  2017-01-13       Impact factor: 3.988

10.  Glycoform analysis of recombinant and human immunodeficiency virus envelope protein gp120 via higher energy collisional dissociation and spectral-aligning strategy.

Authors:  Weiming Yang; Punit Shah; Shadi Toghi Eshghi; Shuang Yang; Shisheng Sun; Minghui Ao; Abigail Rubin; J Brooks Jackson; Hui Zhang
Journal:  Anal Chem       Date:  2014-07-02       Impact factor: 6.986

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