Literature DB >> 26390280

Chemoenzymatic method for glycomics: Isolation, identification, and quantitation.

Shuang Yang1, Abigail Rubin1, Shadi Toghi Eshghi1, Hui Zhang1.   

Abstract

Over the past decade, considerable progress has been made with respect to the analytical methods for analysis of glycans from biological sources. Regardless of the specific methods that are used, glycan analysis includes isolation, identification, and quantitation. Derivatization is indispensable to increase their identification. Derivatization of glycans can be performed by permethylation or carbodiimide coupling/esterification. By introducing a fluorophore or chromophore at their reducing end, glycans can be separated by electrophoresis or chromatography. The fluorogenically labeled glycans can be quantitated using fluorescent detection. The recently developed approaches using solid-phase such as glycoprotein immobilization for glycan extraction and on-tissue glycan mass spectrometry imaging demonstrate advantages over methods performed in solution. Derivatization of sialic acids is favorably implemented on the solid support using carbodiimide coupling, and the released glycans can be further modified at the reducing end or permethylated for quantitative analysis. In this review, methods for glycan isolation, identification, and quantitation are discussed.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  Glycomics; Glycoproteomics; Isobaric labeling; Mass spectrometry; iGIG

Mesh:

Substances:

Year:  2015        PMID: 26390280      PMCID: PMC4715912          DOI: 10.1002/pmic.201500266

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  111 in total

Review 1.  Targeting glycosylation as a therapeutic approach.

Authors:  Raymond A Dwek; Terry D Butters; Frances M Platt; Nicole Zitzmann
Journal:  Nat Rev Drug Discov       Date:  2002-01       Impact factor: 84.694

2.  Vinyl sulfone: a versatile function for simple bioconjugation and immobilization.

Authors:  Julia Morales-Sanfrutos; Javier Lopez-Jaramillo; Mariano Ortega-Muñoz; Alicia Megia-Fernandez; Francisco Perez-Balderas; Fernando Hernandez-Mateo; Francisco Santoyo-Gonzalez
Journal:  Org Biomol Chem       Date:  2009-12-11       Impact factor: 3.876

3.  Manipulating replication processes within a dynamic covalent framework.

Authors:  Vicente del Amo; Alexandra M Z Slawin; Douglas Philp
Journal:  Org Lett       Date:  2008-09-25       Impact factor: 6.005

4.  Versatile fluorescent derivatization of glycans for glycomic analysis.

Authors:  Baoyun Xia; Ziad S Kawar; Tongzhong Ju; Richard A Alvarez; Goverdhan P Sachdev; Richard D Cummings
Journal:  Nat Methods       Date:  2005-11       Impact factor: 28.547

5.  Use of a 2,5-dihydroxybenzoic acid/aniline MALDI matrix for improved detection and on-target Derivatization of glycans: A preliminary report.

Authors:  Sergei I Snovida; Vincent C Chen; Hélène Perreault
Journal:  Anal Chem       Date:  2006-12-15       Impact factor: 6.986

6.  Size-selective enrichment of N-linked glycans using highly ordered mesoporous carbon material and detection by MALDI-TOF MS.

Authors:  Hongqiang Qin; Liang Zhao; Ruibin Li; Ren'an Wu; Hanfa Zou
Journal:  Anal Chem       Date:  2011-09-20       Impact factor: 6.986

7.  Evolutionary differences in glycosaminoglycan fine structure detected by quantitative glycan reductive isotope labeling.

Authors:  Roger Lawrence; Sara K Olson; Robert E Steele; Lianchun Wang; Rahul Warrior; Richard D Cummings; Jeffrey D Esko
Journal:  J Biol Chem       Date:  2008-09-24       Impact factor: 5.157

8.  Glycan analysis by isobaric aldehyde reactive tags and mass spectrometry.

Authors:  Shuang Yang; Wei Yuan; Weiming Yang; Jianying Zhou; Robert Harlan; James Edwards; Shuwei Li; Hui Zhang
Journal:  Anal Chem       Date:  2013-08-12       Impact factor: 6.986

9.  On the use of DHB/aniline and DHB/N,N-dimethylaniline matrices for improved detection of carbohydrates: automated identification of oligosaccharides and quantitative analysis of sialylated glycans by MALDI-TOF mass spectrometry.

Authors:  Sergei I Snovida; Justin M Rak-Banville; Hélène Perreault
Journal:  J Am Soc Mass Spectrom       Date:  2008-05-03       Impact factor: 3.109

10.  Ultrasensitive capillary electrophoretic analysis of potentially immunogenic carbohydrate residues in biologics: galactose-α-1,3-galactose containing oligosaccharides.

Authors:  Zoltan Szabo; Andras Guttman; Jonathan Bones; Randi L Shand; David Meh; Barry L Karger
Journal:  Mol Pharm       Date:  2012-05-15       Impact factor: 4.939

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  7 in total

1.  Modification of Sialic Acids on Solid Phase: Accurate Characterization of Protein Sialylation.

Authors:  Shuang Yang; Lei Zhang; Stefani Thomas; Yingwei Hu; Shuwei Li; John Cipollo; Hui Zhang
Journal:  Anal Chem       Date:  2017-05-25       Impact factor: 6.986

2.  LC-MS/MS analysis of permethylated N-glycans facilitating isomeric characterization.

Authors:  Shiyue Zhou; Xue Dong; Lucas Veillon; Yifan Huang; Yehia Mechref
Journal:  Anal Bioanal Chem       Date:  2016-10-28       Impact factor: 4.142

3.  Simultaneous quantification of N- and O-glycans using a solid-phase method.

Authors:  Shuang Yang; Yingwei Hu; Lori Sokoll; Hui Zhang
Journal:  Nat Protoc       Date:  2017-05-18       Impact factor: 13.491

4.  Simultaneous analyses of N-linked and O-linked glycans of ovarian cancer cells using solid-phase chemoenzymatic method.

Authors:  Shuang Yang; Naseruddin Höti; Weiming Yang; Yang Liu; Lijun Chen; Shuwei Li; Hui Zhang
Journal:  Clin Proteomics       Date:  2017-01-13       Impact factor: 3.988

Review 5.  A tutorial in small molecule identification via electrospray ionization-mass spectrometry: The practical art of structural elucidation.

Authors:  Thomas De Vijlder; Dirk Valkenborg; Filip Lemière; Edwin P Romijn; Kris Laukens; Filip Cuyckens
Journal:  Mass Spectrom Rev       Date:  2017-11-09       Impact factor: 10.946

6.  QUANTITY: An Isobaric Tag for Quantitative Glycomics.

Authors:  Shuang Yang; Meiyao Wang; Lijun Chen; Bojiao Yin; Guoqiang Song; Illarion V Turko; Karen W Phinney; Michael J Betenbaugh; Hui Zhang; Shuwei Li
Journal:  Sci Rep       Date:  2015-11-30       Impact factor: 4.379

Review 7.  A Pragmatic Guide to Enrichment Strategies for Mass Spectrometry-Based Glycoproteomics.

Authors:  Nicholas M Riley; Carolyn R Bertozzi; Sharon J Pitteri
Journal:  Mol Cell Proteomics       Date:  2020-12-20       Impact factor: 5.911

  7 in total

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