Literature DB >> 24109416

(1S,3S,8R,10R,11R)-3,7,7,10-Tetra-methyl-tri-cyclo-[6.4.0.0(1,3)]dodecan-11-ol.

Ahmed Benharref1, Jamal El Karroumi, Lahcen El Ammari, Mohamed Saadi, Moha Berraho.   

Abstract

The title compound, C16H28O, was synthesized by three steps from β-himachalene (3,5,5,9-tetra-methyl-2,4a,5,6,7,8-hexa-hydro-1H-benzo-cyclo-heptene), which was isolated from the essential oil of the Atlas cedar (Cedrus atlantica). The mol-ecule is built up from fused six- and seven-membered rings and an appended three-membered ring. The six-membered ring has twist-boat conformation, whereas the seven-membered ring displays a chair conformation. In the crystal, mol-ecules are linked into chains propagating along the a-axis direction by O-H⋯O hydrogen bonds.

Entities:  

Year:  2013        PMID: 24109416      PMCID: PMC3793829          DOI: 10.1107/S1600536813020576

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the reactivity and biological properties of β-himachalene, see: Auhmani et al.(2002 ▶); El Jamili et al. (2002 ▶); Daoubi et al. (2004 ▶). For related structures, see: Ourhriss et al. (2013 ▶); Benharref et al. (2013 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C16H28O M = 236.38 Orthorhombic, a = 5.8796 (2) Å b = 12.7822 (4) Å c = 19.1496 (7) Å V = 1439.17 (8) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 298 K 0.25 × 0.15 × 0.10 mm

Data collection

Bruker APEXII CCD diffractometer 8482 measured reflections 1724 independent reflections 1485 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.102 S = 1.03 1724 reflections 160 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.12 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813020576/bt6923sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813020576/bt6923Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813020576/bt6923Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H28OF(000) = 528
Mr = 236.38Dx = 1.091 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 1724 reflections
a = 5.8796 (2) Åθ = 2.7–26.4°
b = 12.7822 (4) ŵ = 0.07 mm1
c = 19.1496 (7) ÅT = 298 K
V = 1439.17 (8) Å3Prism, colourless
Z = 40.25 × 0.15 × 0.10 mm
Bruker APEXII CCD diffractometer1485 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.030
Graphite monochromatorθmax = 26.4°, θmin = 2.7°
ω and φ scansh = −7→6
8482 measured reflectionsk = −15→15
1724 independent reflectionsl = −23→23
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.102w = 1/[σ2(Fo2) + (0.0536P)2 + 0.1784P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
1724 reflectionsΔρmax = 0.15 e Å3
160 parametersΔρmin = −0.12 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.012 (3)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
xyzUiso*/Ueq
C10.8389 (3)1.04007 (14)0.11966 (10)0.0381 (4)
C20.9711 (4)1.13257 (15)0.14824 (11)0.0510 (5)
H2A1.13391.12440.15440.061*
H2B0.92311.20210.13420.061*
C30.8171 (4)1.07206 (16)0.19602 (11)0.0467 (5)
C40.9300 (4)1.00520 (18)0.25137 (11)0.0585 (6)
H4A0.91841.04110.29580.070*
H4B1.09040.99910.24020.070*
C50.8329 (5)0.89612 (19)0.25971 (11)0.0612 (6)
H5A0.66870.89950.25530.073*
H5B0.86780.87070.30620.073*
C60.9253 (4)0.81891 (16)0.20627 (10)0.0551 (6)
H6A0.87180.74990.21940.066*
H6B1.08960.81830.21080.066*
C70.8694 (3)0.83462 (15)0.12864 (10)0.0413 (5)
C80.9669 (3)0.93978 (13)0.09937 (9)0.0352 (4)
H81.12100.94670.11830.042*
C90.9916 (4)0.93761 (14)0.01895 (9)0.0439 (4)
H9A1.12880.89960.00680.053*
H9B0.86340.9003−0.00090.053*
C101.0027 (4)1.04668 (16)−0.01305 (10)0.0489 (5)
H101.11511.08730.01330.059*
C110.7729 (4)1.09873 (15)−0.00364 (12)0.0528 (6)
H110.67291.0760−0.04170.063*
C120.6602 (4)1.06999 (15)0.06595 (11)0.0464 (5)
H12A0.57281.12910.08300.056*
H12B0.55671.01180.05900.056*
C130.5996 (5)1.1233 (2)0.22183 (14)0.0690 (7)
H13A0.62961.15990.26460.104*
H13B0.48631.07060.22980.104*
H13C0.54561.17190.18740.104*
C140.6117 (4)0.82570 (18)0.11891 (13)0.0562 (6)
H14A0.57520.83170.07020.084*
H14B0.53750.88070.14430.084*
H14C0.56070.75910.13610.084*
C150.9811 (5)0.74201 (14)0.09077 (12)0.0563 (6)
H15A0.93250.67770.11190.084*
H15B1.14350.74780.09420.084*
H15C0.93710.74260.04250.084*
C161.0780 (6)1.0442 (2)−0.08917 (12)0.0769 (8)
H16A1.23211.0197−0.09190.115*
H16B1.06861.1134−0.10850.115*
H16C0.98070.9980−0.11500.115*
O10.8089 (4)1.20972 (12)−0.01013 (12)0.0789 (6)
H10.68571.2396−0.01200.118*
U11U22U33U12U13U23
C10.0310 (9)0.0379 (9)0.0454 (10)−0.0016 (8)−0.0027 (9)−0.0033 (8)
C20.0448 (12)0.0457 (10)0.0625 (13)−0.0076 (10)−0.0022 (11)−0.0117 (9)
C30.0404 (11)0.0495 (11)0.0502 (11)−0.0040 (10)0.0018 (10)−0.0143 (9)
C40.0555 (14)0.0780 (15)0.0419 (11)−0.0040 (12)−0.0058 (11)−0.0128 (10)
C50.0680 (15)0.0762 (15)0.0394 (11)−0.0016 (14)0.0003 (12)0.0067 (10)
C60.0609 (14)0.0566 (12)0.0478 (11)0.0041 (11)−0.0034 (11)0.0126 (10)
C70.0406 (11)0.0402 (9)0.0431 (10)−0.0007 (9)−0.0014 (9)0.0032 (8)
C80.0285 (9)0.0394 (9)0.0378 (9)−0.0005 (8)−0.0029 (8)0.0002 (7)
C90.0476 (11)0.0420 (9)0.0419 (10)0.0026 (9)0.0028 (9)−0.0010 (8)
C100.0540 (12)0.0490 (11)0.0435 (10)−0.0043 (11)−0.0007 (10)0.0056 (9)
C110.0549 (13)0.0448 (11)0.0586 (12)−0.0005 (10)−0.0141 (11)0.0099 (10)
C120.0375 (10)0.0416 (10)0.0603 (12)0.0045 (9)−0.0077 (10)0.0004 (9)
C130.0592 (15)0.0730 (16)0.0748 (16)0.0046 (14)0.0130 (13)−0.0234 (13)
C140.0478 (12)0.0572 (13)0.0635 (13)−0.0135 (11)−0.0021 (11)0.0105 (11)
C150.0687 (16)0.0371 (10)0.0632 (13)0.0014 (11)0.0020 (13)0.0016 (9)
C160.100 (2)0.0785 (16)0.0527 (13)0.0024 (17)0.0111 (15)0.0157 (12)
O10.0872 (13)0.0459 (8)0.1035 (14)0.0081 (9)0.0012 (13)0.0243 (9)
C1—C21.517 (3)C9—H9A0.9700
C1—C121.519 (3)C9—H9B0.9700
C1—C31.524 (3)C10—C111.517 (3)
C1—C81.536 (2)C10—C161.524 (3)
C2—C31.502 (3)C10—H100.9800
C2—H2A0.9700C11—O11.440 (2)
C2—H2B0.9700C11—C121.533 (3)
C3—C41.515 (3)C11—H110.9800
C3—C131.520 (3)C12—H12A0.9700
C4—C51.515 (3)C12—H12B0.9700
C4—H4A0.9700C13—H13A0.9600
C4—H4B0.9700C13—H13B0.9600
C5—C61.522 (3)C13—H13C0.9600
C5—H5A0.9700C14—H14A0.9600
C5—H5B0.9700C14—H14B0.9600
C6—C71.536 (3)C14—H14C0.9600
C6—H6A0.9700C15—H15A0.9600
C6—H6B0.9700C15—H15B0.9600
C7—C141.531 (3)C15—H15C0.9600
C7—C151.536 (3)C16—H16A0.9600
C7—C81.565 (2)C16—H16B0.9600
C8—C91.547 (2)C16—H16C0.9600
C8—H80.9800O1—H10.8200
C9—C101.524 (3)
C2—C1—C12113.73 (16)C10—C9—H9A109.0
C2—C1—C359.18 (13)C8—C9—H9A109.0
C12—C1—C3121.59 (17)C10—C9—H9B109.0
C2—C1—C8119.38 (16)C8—C9—H9B109.0
C12—C1—C8112.19 (15)H9A—C9—H9B107.8
C3—C1—C8120.51 (16)C11—C10—C16112.4 (2)
C3—C2—C160.63 (13)C11—C10—C9108.36 (18)
C3—C2—H2A117.7C16—C10—C9112.22 (18)
C1—C2—H2A117.7C11—C10—H10107.9
C3—C2—H2B117.7C16—C10—H10107.9
C1—C2—H2B117.7C9—C10—H10107.9
H2A—C2—H2B114.8O1—C11—C10106.89 (19)
C2—C3—C4116.9 (2)O1—C11—C12112.0 (2)
C2—C3—C13118.91 (19)C10—C11—C12112.53 (17)
C4—C3—C13112.6 (2)O1—C11—H11108.4
C2—C3—C160.18 (12)C10—C11—H11108.4
C4—C3—C1118.90 (17)C12—C11—H11108.4
C13—C3—C1119.91 (19)C1—C12—C11110.48 (17)
C3—C4—C5115.3 (2)C1—C12—H12A109.6
C3—C4—H4A108.4C11—C12—H12A109.6
C5—C4—H4A108.4C1—C12—H12B109.6
C3—C4—H4B108.4C11—C12—H12B109.6
C5—C4—H4B108.4H12A—C12—H12B108.1
H4A—C4—H4B107.5C3—C13—H13A109.5
C4—C5—C6113.0 (2)C3—C13—H13B109.5
C4—C5—H5A109.0H13A—C13—H13B109.5
C6—C5—H5A109.0C3—C13—H13C109.5
C4—C5—H5B109.0H13A—C13—H13C109.5
C6—C5—H5B109.0H13B—C13—H13C109.5
H5A—C5—H5B107.8C7—C14—H14A109.5
C5—C6—C7119.33 (18)C7—C14—H14B109.5
C5—C6—H6A107.5H14A—C14—H14B109.5
C7—C6—H6A107.5C7—C14—H14C109.5
C5—C6—H6B107.5H14A—C14—H14C109.5
C7—C6—H6B107.5H14B—C14—H14C109.5
H6A—C6—H6B107.0C7—C15—H15A109.5
C14—C7—C6108.64 (19)C7—C15—H15B109.5
C14—C7—C15108.0 (2)H15A—C15—H15B109.5
C6—C7—C15105.37 (16)C7—C15—H15C109.5
C14—C7—C8112.51 (17)H15A—C15—H15C109.5
C6—C7—C8112.38 (16)H15B—C15—H15C109.5
C15—C7—C8109.65 (16)C10—C16—H16A109.5
C1—C8—C9108.22 (15)C10—C16—H16B109.5
C1—C8—C7116.53 (15)H16A—C16—H16B109.5
C9—C8—C7112.05 (14)C10—C16—H16C109.5
C1—C8—H8106.5H16A—C16—H16C109.5
C9—C8—H8106.5H16B—C16—H16C109.5
C7—C8—H8106.5C11—O1—H1109.5
C10—C9—C8112.81 (15)
D—H···AD—HH···AD···AD—H···A
O1—H1···O1i0.822.353.139 (3)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯O1i 0.822.353.139 (3)163

Symmetry code: (i) .

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