Literature DB >> 24109285

(Azido-κN){(E)-2-[1-(pyridin-2-yl)ethyl-idene-amino]-phenolato-κ(3) N,N',O}copper(II).

Amitabha Datta1, Jack K Clegg, Jui-Hsien Huang, Shiann-Cherng Sheu.   

Abstract

In the title complex, [Cu(C13H11N2O)(N3)], the Cu(II) cation is four-coordinated by an N2O donor set of the tridentate Schiff base ligand and by the terminal N atom of the azide anion, forming a slightly distorted square-planar configuration.

Entities:  

Year:  2013        PMID: 24109285      PMCID: PMC3793698          DOI: 10.1107/S1600536813019570

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Talukder et al. (2004 ▶); Sun (2008 ▶); Wang et al. (2012 ▶); Yu (2012 ▶). For the synthesis, see: Shita et al. (2009 ▶).

Experimental

Crystal data

[Cu(C13H11N2O)(N3)] M = 316.81 Monoclinic, a = 6.5881 (3) Å b = 10.1576 (3) Å c = 18.3884 (7) Å β = 92.810 (3)° V = 1229.06 (8) Å3 Z = 4 Cu Kα radiation μ = 2.54 mm−1 T = 120 K 0.57 × 0.31 × 0.04 mm

Data collection

Agilent Xcalibur Gemini ultra diffractometer with Eos detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) ▶ T min = 0.709, T max = 1.000 4723 measured reflections 2357 independent reflections 2180 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.092 S = 1.05 2357 reflections 182 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.40 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶) and WinGX32 (Farrugia, 2012 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813019570/lr2111sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813019570/lr2111Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C13H11CuN2O)(N3)]F(000) = 644
Mr = 316.81Dx = 1.712 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2ybcCell parameters from 2697 reflections
a = 6.5881 (3) Åθ = 4.4–71.9°
b = 10.1576 (3) ŵ = 2.54 mm1
c = 18.3884 (7) ÅT = 120 K
β = 92.810 (3)°Plate, green
V = 1229.06 (8) Å30.57 × 0.31 × 0.04 mm
Z = 4
Agilent Xcalibur Gemini ultra diffractometer with Eos detector2357 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source2180 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.021
Detector resolution: 16.1183 pixels mm-1θmax = 72.0°, θmin = 4.8°
ω scansh = −8→6
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −11→12
Tmin = 0.709, Tmax = 1.000l = −21→22
4723 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0589P)2 + 0.5226P] where P = (Fo2 + 2Fc2)/3
2357 reflections(Δ/σ)max < 0.001
182 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.40 e Å3
Experimental. CrysAlisPro, Agilent Technologies, Version 1.171.35.21 (release 20-01-2012 CrysAlis171 .NET) (compiled Jan 23 2012,18:06:46). Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C110.1572 (3)0.7721 (2)0.10880 (11)0.0224 (4)
H110.13110.83640.14470.027*
C120.1511 (3)0.80806 (19)0.03531 (13)0.0238 (4)
H120.12170.89650.02160.029*
C130.1878 (3)0.7152 (2)−0.01764 (11)0.0214 (4)
H130.18420.7401−0.06750.026*
N30.3338 (3)0.14937 (18)0.06852 (10)0.0267 (4)
N40.1971 (3)0.12200 (16)0.10667 (9)0.0225 (4)
N50.0684 (3)0.09080 (19)0.14363 (10)0.0300 (4)
C10.3018 (3)0.3279 (2)−0.13806 (11)0.0190 (4)
C20.3721 (3)0.1131 (2)−0.10036 (11)0.0233 (4)
H20.39750.0518−0.06200.028*
C30.3734 (3)0.0698 (2)−0.17231 (12)0.0270 (4)
H30.3992−0.0201−0.18290.032*
C40.3368 (3)0.1587 (2)−0.22775 (12)0.0281 (5)
H40.33460.1309−0.27710.034*
C50.3030 (3)0.2905 (2)−0.21045 (11)0.0250 (4)
H50.28090.3539−0.24800.030*
C60.2590 (3)0.4639 (2)−0.11276 (10)0.0190 (4)
C70.2071 (3)0.5713 (2)−0.16602 (11)0.0269 (4)
H7A0.07530.6095−0.15530.040*
H7B0.20010.5351−0.21550.040*
H7C0.31200.6397−0.16220.040*
C80.2306 (3)0.58395 (19)0.00240 (10)0.0176 (4)
C90.2387 (3)0.54692 (19)0.07755 (10)0.0181 (4)
C100.2008 (3)0.6441 (2)0.12986 (11)0.0208 (4)
H100.20530.62140.18000.025*
N10.3362 (2)0.23872 (17)−0.08411 (9)0.0193 (3)
N20.2667 (2)0.47613 (16)−0.04273 (9)0.0172 (3)
O10.2789 (2)0.42425 (13)0.09719 (7)0.0201 (3)
Cu10.31041 (4)0.31370 (3)0.014256 (14)0.01721 (13)
U11U22U33U12U13U23
C110.0158 (9)0.0196 (10)0.0318 (11)−0.0014 (7)0.0007 (8)−0.0067 (8)
C120.0179 (10)0.0169 (10)0.0362 (12)−0.0003 (7)−0.0015 (8)−0.0001 (8)
C130.0173 (10)0.0203 (10)0.0262 (10)−0.0010 (7)−0.0023 (8)0.0030 (8)
N30.0297 (10)0.0213 (8)0.0294 (9)0.0053 (7)0.0047 (8)0.0048 (7)
N40.0305 (9)0.0141 (8)0.0221 (8)0.0025 (7)−0.0051 (7)−0.0003 (6)
N50.0361 (10)0.0259 (9)0.0278 (9)−0.0051 (8)0.0021 (8)0.0035 (8)
C10.0107 (9)0.0248 (10)0.0213 (9)0.0000 (7)0.0001 (7)0.0001 (8)
C20.0186 (9)0.0242 (10)0.0271 (10)0.0020 (8)0.0013 (7)−0.0035 (8)
C30.0209 (10)0.0283 (11)0.0320 (11)−0.0001 (8)0.0019 (8)−0.0091 (9)
C40.0211 (10)0.0381 (12)0.0253 (10)−0.0010 (9)0.0020 (8)−0.0096 (9)
C50.0190 (10)0.0330 (11)0.0230 (10)0.0007 (8)0.0010 (8)−0.0004 (9)
C60.0117 (8)0.0239 (10)0.0215 (9)0.0010 (7)0.0015 (7)0.0035 (8)
C70.0322 (11)0.0283 (11)0.0202 (9)0.0067 (9)0.0017 (8)0.0039 (8)
C80.0117 (8)0.0191 (9)0.0220 (9)−0.0007 (7)0.0006 (7)−0.0001 (7)
C90.0124 (8)0.0184 (9)0.0236 (9)−0.0006 (7)0.0017 (7)−0.0008 (8)
C100.0157 (9)0.0233 (10)0.0233 (9)−0.0006 (7)0.0012 (7)−0.0021 (8)
N10.0139 (7)0.0221 (8)0.0218 (8)0.0013 (6)0.0016 (6)−0.0016 (7)
N20.0123 (7)0.0193 (8)0.0199 (7)−0.0003 (6)0.0000 (6)0.0018 (6)
O10.0241 (7)0.0180 (7)0.0182 (6)0.0025 (5)0.0011 (5)0.0012 (5)
Cu10.0182 (2)0.01587 (19)0.01753 (19)0.00191 (10)0.00069 (12)0.00060 (10)
C11—C101.383 (3)C3—H30.9500
C11—C121.399 (3)C4—C51.396 (3)
C11—H110.9500C4—H40.9500
C12—C131.385 (3)C5—H50.9500
C12—H120.9500C6—N21.292 (3)
C13—C81.408 (3)C6—C71.495 (3)
C13—H130.9500C7—H7A0.9800
N3—N41.201 (3)C7—H7B0.9800
N3—Cu11.9470 (18)C7—H7C0.9800
N4—N51.157 (3)C8—N21.402 (3)
C1—N11.354 (3)C8—C91.431 (3)
C1—C51.385 (3)C9—O11.320 (2)
C1—C61.489 (3)C9—C101.409 (3)
C2—N11.334 (3)C10—H100.9500
C2—C31.395 (3)N1—Cu11.9775 (16)
C2—H20.9500N2—Cu11.9682 (16)
C3—C41.375 (3)O1—Cu11.9134 (14)
C10—C11—C12120.79 (18)C6—C7—H7A109.5
C10—C11—H11119.6C6—C7—H7B109.5
C12—C11—H11119.6H7A—C7—H7B109.5
C13—C12—C11120.23 (19)C6—C7—H7C109.5
C13—C12—H12119.9H7A—C7—H7C109.5
C11—C12—H12119.9H7B—C7—H7C109.5
C12—C13—C8120.02 (19)N2—C8—C13128.50 (18)
C12—C13—H13120.0N2—C8—C9111.54 (17)
C8—C13—H13120.0C13—C8—C9119.96 (18)
N4—N3—Cu1117.06 (14)O1—C9—C10120.94 (18)
N5—N4—N3177.4 (2)O1—C9—C8120.65 (17)
N1—C1—C5120.84 (19)C10—C9—C8118.41 (18)
N1—C1—C6114.76 (17)C11—C10—C9120.59 (19)
C5—C1—C6124.37 (19)C11—C10—H10119.7
N1—C2—C3121.6 (2)C9—C10—H10119.7
N1—C2—H2119.2C2—N1—C1120.03 (17)
C3—C2—H2119.2C2—N1—Cu1126.68 (14)
C4—C3—C2119.1 (2)C1—N1—Cu1113.19 (14)
C4—C3—H3120.4C6—N2—C8131.76 (18)
C2—C3—H3120.4C6—N2—Cu1116.57 (14)
C3—C4—C5119.0 (2)C8—N2—Cu1111.37 (12)
C3—C4—H4120.5C9—O1—Cu1111.35 (12)
C5—C4—H4120.5O1—Cu1—N395.95 (7)
C1—C5—C4119.3 (2)O1—Cu1—N285.04 (6)
C1—C5—H5120.3N3—Cu1—N2175.89 (7)
C4—C5—H5120.3O1—Cu1—N1166.56 (7)
N2—C6—C1113.71 (17)N3—Cu1—N197.49 (8)
N2—C6—C7125.38 (19)N2—Cu1—N181.53 (7)
C1—C6—C7120.89 (17)
C10—C11—C12—C130.3 (3)C7—C6—N2—C80.6 (3)
C11—C12—C13—C80.3 (3)C1—C6—N2—Cu1−4.7 (2)
Cu1—N3—N4—N5166 (5)C7—C6—N2—Cu1173.67 (15)
N1—C2—C3—C40.0 (3)C13—C8—N2—C6−4.9 (3)
C2—C3—C4—C51.1 (3)C9—C8—N2—C6174.29 (18)
N1—C1—C5—C41.1 (3)C13—C8—N2—Cu1−178.26 (16)
C6—C1—C5—C4−177.32 (19)C9—C8—N2—Cu10.96 (18)
C3—C4—C5—C1−1.6 (3)C10—C9—O1—Cu1177.20 (14)
N1—C1—C6—N21.7 (2)C8—C9—O1—Cu1−2.2 (2)
C5—C1—C6—N2−179.81 (18)C9—O1—Cu1—N3−173.93 (13)
N1—C1—C6—C7−176.72 (17)C9—O1—Cu1—N22.06 (12)
C5—C1—C6—C71.7 (3)C9—O1—Cu1—N15.2 (3)
C12—C13—C8—N2178.35 (18)N4—N3—Cu1—O156.36 (17)
C12—C13—C8—C9−0.8 (3)N4—N3—Cu1—N2−47.4 (11)
N2—C8—C9—O10.8 (2)N4—N3—Cu1—N1−123.42 (16)
C13—C8—C9—O1−179.90 (17)C6—N2—Cu1—O1−176.11 (14)
N2—C8—C9—C10−178.59 (16)C8—N2—Cu1—O1−1.67 (12)
C13—C8—C9—C100.7 (3)C6—N2—Cu1—N3−72.0 (10)
C12—C11—C10—C9−0.4 (3)C8—N2—Cu1—N3102.5 (10)
O1—C9—C10—C11−179.47 (17)C6—N2—Cu1—N14.61 (14)
C8—C9—C10—C11−0.1 (3)C8—N2—Cu1—N1179.05 (13)
C3—C2—N1—C1−0.6 (3)C2—N1—Cu1—O1177.1 (2)
C3—C2—N1—Cu1175.50 (15)C1—N1—Cu1—O1−6.5 (4)
C5—C1—N1—C20.1 (3)C2—N1—Cu1—N3−3.81 (17)
C6—C1—N1—C2178.62 (16)C1—N1—Cu1—N3172.56 (14)
C5—C1—N1—Cu1−176.55 (15)C2—N1—Cu1—N2−179.78 (17)
C6—C1—N1—Cu12.0 (2)C1—N1—Cu1—N2−3.41 (13)
C1—C6—N2—C8−177.73 (17)
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Chlorido[4-chloro-2-(pyridin-2-yl-methyl-imino-meth-yl)phenolato-κ(3)N,N',O]copper(II).

Authors:  Haixia Wang; Yuehe Lang; Shaohong Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-04

3.  (Azido-κN)[6-meth-oxy-2-(2-pyridylmethyl-imino-meth-yl)phenolato-κN,N',O]copper(II).

Authors:  Xuan Sun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-06

4.  A second polymorph of aqua-{4-chloro-2-[(pyridin-2-ylmeth-yl)imino-meth-yl]-phenolato}copper(II) nitrate mono-hydrate.

Authors:  Jing Yu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-10
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.