Literature DB >> 21200607

(Azido-κN)[6-meth-oxy-2-(2-pyridylmethyl-imino-meth-yl)phenolato-κN,N',O]copper(II).

Xuan Sun1.   

Abstract

The title compound, [Cu(C(14)H(13)N(2)O(2))(N(3))], is a monomeric neutral complex with one unsymmetrical 6-meth-oxy-2-(2-pyridylmethyl-imino-meth-yl)phenolate Schiff base ligand and one azide ligand. The mol-ecules are connected by a combination of two π-π inter-actions [centroid-centroid distances 3.359 (3) and 3.378 (2) Å] and one C-H⋯N hydrogen bond into a two-dimensional supra-molecular network structure.

Entities:  

Year:  2007        PMID: 21200607      PMCID: PMC2914922          DOI: 10.1107/S1600536807046260

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Kannappan et al. (2005 ▶); Li & Zhang (2004 ▶); Ni & Wang (2007 ▶); Sun (2005 ▶); Yang (2005 ▶).

Experimental

Crystal data

[Cu(C14H13N2O2)(N3)] M = 346.83 Triclinic, a = 6.7197 (2) Å b = 10.2820 (2) Å c = 10.5549 (5) Å α = 86.130 (2)° β = 81.155 (2)° γ = 76.289 (3)° V = 699.69 (4) Å3 Z = 2 Mo Kα radiation μ = 1.58 mm−1 T = 293 (2) K 0.10 × 0.06 × 0.04 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.892, T max = 0.941 11804 measured reflections 3207 independent reflections 2815 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.090 S = 0.99 3207 reflections 199 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.29 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: XP (Sheldrick, 1998 ▶); software used to prepare material for publication: SHELXL97 and XP. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807046260/si2035sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807046260/si2035Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C14H13N2O2)(N3)]Z = 2
Mr = 346.83F000 = 354
Triclinic, P1Dx = 1.646 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 6.7197 (2) ÅCell parameters from 3207 reflections
b = 10.2820 (2) Åθ = 2.0–27.5º
c = 10.5549 (5) ŵ = 1.58 mm1
α = 86.130 (2)ºT = 293 (2) K
β = 81.155 (2)ºTiny block, brown
γ = 76.289 (3)º0.10 × 0.06 × 0.04 mm
V = 699.69 (4) Å3
Bruker APEXII CCD area-detector diffractometer3207 independent reflections
Radiation source: fine-focus sealed tube2815 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.020
T = 293(2) Kθmax = 27.5º
φ and ω scansθmin = 2.0º
Absorption correction: multi-scan(SADABS; Sheldrick, 2003)h = −8→8
Tmin = 0.892, Tmax = 0.941k = −13→13
11804 measured reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028H-atom parameters constrained
wR(F2) = 0.090  w = 1/[σ2(Fo2) + (0.066P)2 + 0.0216P] where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max = 0.001
3207 reflectionsΔρmax = 0.35 e Å3
199 parametersΔρmin = −0.29 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.71363 (3)0.01027 (2)0.64642 (2)0.03501 (10)
O10.6949 (2)0.15473 (13)0.52246 (13)0.0419 (3)
O20.6515 (3)0.38174 (15)0.38914 (16)0.0527 (4)
N10.6386 (4)0.1355 (2)0.78607 (19)0.0566 (5)
N20.7302 (3)0.21856 (17)0.79457 (17)0.0483 (4)
N30.8155 (4)0.2994 (2)0.8096 (3)0.0735 (7)
N40.7379 (2)−0.15134 (16)0.76640 (16)0.0373 (3)
N50.7842 (2)−0.12500 (16)0.51834 (16)0.0357 (3)
C50.7893 (3)−0.26937 (19)0.7095 (2)0.0380 (4)
C80.7789 (3)0.0241 (2)0.33149 (19)0.0381 (4)
C120.7057 (3)0.2671 (2)0.3210 (2)0.0411 (4)
C130.7266 (3)0.14646 (19)0.39683 (19)0.0369 (4)
C10.7074 (3)−0.1514 (2)0.8959 (2)0.0459 (5)
H10.6707−0.06970.93630.055*
C20.7285 (4)−0.2665 (3)0.9697 (2)0.0553 (6)
H20.7077−0.26301.05870.066*
C30.7806 (4)−0.3881 (2)0.9112 (2)0.0530 (6)
H30.7940−0.46780.95990.064*
C40.8128 (3)−0.3895 (2)0.7786 (2)0.0472 (5)
H40.8498−0.47030.73660.057*
C70.8033 (3)−0.1038 (2)0.3957 (2)0.0399 (4)
H70.8357−0.17840.34480.048*
C90.8117 (3)0.0253 (2)0.1950 (2)0.0467 (5)
H90.8470−0.05530.15280.056*
C100.7921 (3)0.1424 (2)0.1258 (2)0.0511 (5)
H100.81440.14180.03670.061*
C110.7386 (3)0.2640 (2)0.1881 (2)0.0460 (5)
H110.72480.34390.13990.055*
C60.8206 (3)−0.26431 (19)0.5655 (2)0.0426 (4)
H6A0.9607−0.31100.53350.051*
H6B0.7257−0.30850.53470.051*
C140.6187 (4)0.5071 (2)0.3204 (3)0.0576 (6)
H14A0.58200.57840.37990.086*
H14B0.50870.51370.27030.086*
H14C0.74310.51380.26460.086*
U11U22U33U12U13U23
Cu10.03917 (16)0.03307 (14)0.03272 (15)−0.00818 (10)−0.00430 (10)−0.00288 (9)
O10.0541 (8)0.0374 (7)0.0338 (7)−0.0092 (6)−0.0065 (6)−0.0025 (5)
O20.0669 (10)0.0411 (8)0.0486 (9)−0.0096 (7)−0.0097 (8)0.0030 (7)
N10.0808 (14)0.0462 (10)0.0410 (11)−0.0179 (10)0.0068 (10)−0.0107 (8)
N20.0719 (12)0.0295 (8)0.0380 (10)0.0006 (8)−0.0104 (8)0.0000 (7)
N30.1041 (19)0.0387 (11)0.0809 (17)−0.0149 (11)−0.0245 (14)−0.0045 (10)
N40.0354 (8)0.0380 (8)0.0394 (9)−0.0103 (6)−0.0063 (7)0.0002 (7)
N50.0347 (8)0.0356 (8)0.0373 (9)−0.0081 (6)−0.0056 (7)−0.0028 (6)
C50.0308 (9)0.0383 (9)0.0460 (11)−0.0102 (7)−0.0071 (8)0.0020 (8)
C80.0348 (9)0.0458 (10)0.0343 (10)−0.0103 (8)−0.0047 (8)−0.0024 (8)
C120.0353 (10)0.0441 (11)0.0444 (11)−0.0095 (8)−0.0083 (8)0.0021 (8)
C130.0306 (9)0.0443 (10)0.0364 (11)−0.0092 (7)−0.0063 (7)0.0007 (8)
C10.0487 (12)0.0496 (12)0.0393 (12)−0.0124 (9)−0.0057 (9)0.0013 (9)
C20.0554 (13)0.0672 (15)0.0434 (13)−0.0178 (11)−0.0073 (10)0.0111 (11)
C30.0510 (12)0.0501 (12)0.0586 (15)−0.0169 (10)−0.0101 (10)0.0175 (10)
C40.0432 (11)0.0391 (10)0.0608 (14)−0.0130 (8)−0.0094 (10)0.0055 (9)
C70.0393 (10)0.0425 (10)0.0387 (11)−0.0090 (8)−0.0040 (8)−0.0108 (8)
C90.0495 (12)0.0569 (12)0.0345 (11)−0.0123 (9)−0.0060 (9)−0.0072 (9)
C100.0501 (12)0.0724 (15)0.0308 (11)−0.0144 (11)−0.0072 (9)0.0029 (10)
C110.0412 (11)0.0548 (12)0.0432 (12)−0.0140 (9)−0.0107 (9)0.0108 (9)
C60.0483 (11)0.0344 (9)0.0454 (12)−0.0087 (8)−0.0068 (9)−0.0056 (8)
C140.0596 (14)0.0430 (12)0.0701 (16)−0.0115 (10)−0.0144 (12)0.0093 (11)
Cu1—O11.9062 (14)C7—C81.423 (3)
Cu1—N11.9504 (19)C7—H70.93
Cu1—N42.0106 (16)C13—C81.419 (3)
Cu1—N51.9315 (16)C13—C121.420 (3)
N1—N21.181 (3)C5—C61.500 (3)
N2—N31.147 (3)C1—C21.364 (3)
O1—C131.316 (2)C1—H10.93
O2—C121.368 (3)C3—C21.377 (4)
O2—C141.423 (3)C3—H30.93
C11—C121.387 (3)C9—C101.355 (3)
C11—C101.397 (3)C9—C81.423 (3)
C11—H110.93C9—H90.93
N5—C71.290 (3)C6—H6A0.97
N5—C61.461 (2)C6—H6B0.97
N4—C51.338 (3)C14—H14A0.96
N4—C11.351 (3)C14—H14B0.96
C4—C31.384 (3)C14—H14C0.96
C4—C51.380 (3)C2—H20.93
C4—H40.93C10—H100.93
O1—Cu1—N190.95 (7)C4—C5—C6121.54 (18)
O1—Cu1—N593.59 (6)N4—C1—C2122.5 (2)
N1—Cu1—N5175.35 (7)N4—C1—H1118.8
O1—Cu1—N4175.78 (5)C2—C1—H1118.8
N4—Cu1—N582.20 (7)C4—C3—C2118.7 (2)
N1—Cu1—N493.26 (8)C4—C3—H3120.6
N1—N2—N3176.4 (2)C2—C3—H3120.6
C13—O1—Cu1127.21 (13)C10—C9—C8120.8 (2)
C12—O2—C14118.41 (18)C10—C9—H9119.6
C12—C11—C10120.8 (2)C8—C9—H9119.6
C12—C11—H11119.6N2—N1—Cu1122.36 (17)
C10—C11—H11119.6N5—C6—C5109.75 (16)
C7—N5—C6117.27 (17)N5—C6—H6A109.7
C7—N5—Cu1126.15 (14)C5—C6—H6A109.7
C6—N5—Cu1116.57 (13)N5—C6—H6B109.7
C5—N4—C1118.20 (18)C5—C6—H6B109.7
C5—N4—Cu1115.20 (14)H6A—C6—H6B108.2
C1—N4—Cu1126.61 (14)C9—C8—C13120.07 (19)
C3—C4—C5119.0 (2)C9—C8—C7116.64 (19)
C3—C4—H4120.5C13—C8—C7123.29 (19)
C5—C4—H4120.5O2—C14—H14A109.5
N5—C7—C8125.60 (18)O2—C14—H14B109.5
N5—C7—H7117.2H14A—C14—H14B109.5
C8—C7—H7117.2O2—C14—H14C109.5
O1—C13—C8124.15 (18)H14A—C14—H14C109.5
O1—C13—C12118.36 (17)H14B—C14—H14C109.5
C8—C13—C12117.49 (18)C1—C2—C3119.4 (2)
O2—C12—C11124.42 (19)C1—C2—H2120.3
O2—C12—C13114.87 (18)C3—C2—H2120.3
C11—C12—C13120.70 (19)C9—C10—C11120.1 (2)
N4—C5—C4122.2 (2)C9—C10—H10119.9
N4—C5—C6116.27 (17)C11—C10—H10119.9
D—H···AD—HH···AD···AD—H···A
C4—H4···N3i0.932.493.189 (2)132
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯N3i0.932.493.189 (2)132

Symmetry code: (i) .

  2 in total

1.  Two different coordination modes of the Schiff base derived from ortho-vanillin and 2-(2-aminomethyl)pyridine in a mononuclear uranyl complex.

Authors:  Sokratis T Tsantis; Zoi G Lada; Demetrios I Tzimopoulos; Vlasoula Bekiari; Vassilis Psycharis; Catherine P Raptopoulou; Spyros P Perlepes
Journal:  Heliyon       Date:  2022-06-11

2.  (Azido-κN){(E)-2-[1-(pyridin-2-yl)ethyl-idene-amino]-phenolato-κ(3) N,N',O}copper(II).

Authors:  Amitabha Datta; Jack K Clegg; Jui-Hsien Huang; Shiann-Cherng Sheu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-20
  2 in total

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