Literature DB >> 22412424

A second polymorph of aqua-{4-chloro-2-[(pyridin-2-ylmeth-yl)imino-meth-yl]-phenolato}copper(II) nitrate mono-hydrate.

Jing Yu1.   

Abstract

The title complex, [Cu(C(13)H(10)ClN(2)O)(H(2)O)]NO(3)·H(2)O, was obtained by the reaction of 5-chloro-salicyl-aldehyde, 2-(amino-meth-yl)pyridine and copper nitrate in methanol. The first reported polymorph of this complex was triclinic [Liang et al. (2010 ▶). Acta Cryst. E66, m40]. The present polymorph crystallized in the monoclinic space group P2(1)/c. The Cu(II) ion is in a square planar environment and is coordinated by one phenolate O, one imine N and one pyridine N atom of the tridentate Schiff base ligand and by one water O atom. In the crystal, mol-ecules are linked through inter-molecular O-H⋯O hydrogen bonds to form chains along the a axis.

Entities:  

Year:  2012        PMID: 22412424      PMCID: PMC3297234          DOI: 10.1107/S1600536812004564

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures and properties of Schiff base copper(II) complexes, see: Patel et al. (2011 ▶); Creaven et al. (2010 ▶); Osowole et al. (2008 ▶). For the complex with triclinic space group P , see: Liang et al. (2010 ▶).

Experimental

Crystal data

[Cu(C13H10ClN2O)(H2O)]NO3·H2O M = 407.26 Monoclinic, a = 7.840 (2) Å b = 8.815 (3) Å c = 23.079 (3) Å β = 99.680 (2)° V = 1572.4 (7) Å3 Z = 4 Mo Kα radiation μ = 1.60 mm−1 T = 298 K 0.22 × 0.20 × 0.19 mm

Data collection

Bruker SMART 1K CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.720, T max = 0.752 12290 measured reflections 3410 independent reflections 2647 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.089 S = 1.06 3410 reflections 233 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.39 e Å−3 Δρmin = −0.48 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and local programs. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812004564/qm2051sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812004564/qm2051Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C13H10ClN2O)(H2O)]NO3·H2OF(000) = 828
Mr = 407.26Dx = 1.720 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 7.840 (2) ÅCell parameters from 3984 reflections
b = 8.815 (3) Åθ = 2.5–26.9°
c = 23.079 (3) ŵ = 1.60 mm1
β = 99.680 (2)°T = 298 K
V = 1572.4 (7) Å3Block, blue
Z = 40.22 × 0.20 × 0.19 mm
Bruker SMART 1K CCD area-detector diffractometer3410 independent reflections
Radiation source: fine-focus sealed tube2647 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.046
ω scansθmax = 27.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −9→9
Tmin = 0.720, Tmax = 0.752k = −11→10
12290 measured reflectionsl = −29→29
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.089H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0362P)2 + 0.669P] where P = (Fo2 + 2Fc2)/3
3410 reflections(Δ/σ)max < 0.001
233 parametersΔρmax = 0.39 e Å3
3 restraintsΔρmin = −0.48 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.31780 (4)0.86046 (4)0.441029 (14)0.03273 (12)
Cl10.30943 (12)1.01565 (10)0.74737 (3)0.0561 (2)
N10.2244 (3)1.0428 (2)0.46999 (9)0.0311 (5)
N20.2433 (3)0.9578 (2)0.36353 (9)0.0341 (5)
N30.0449 (3)0.5644 (3)0.39668 (10)0.0427 (6)
O10.3889 (3)0.7778 (2)0.51693 (8)0.0387 (5)
O20.4383 (4)0.6939 (3)0.40783 (11)0.0392 (5)
O30.1648 (3)0.5200 (3)0.37200 (10)0.0539 (6)
O4−0.0834 (3)0.4839 (3)0.39510 (12)0.0764 (8)
O50.0556 (3)0.6892 (3)0.42285 (11)0.0595 (6)
O60.6908 (3)0.5408 (3)0.47630 (10)0.0499 (5)
C10.2878 (3)0.9799 (3)0.57295 (12)0.0315 (6)
C20.3686 (3)0.8378 (3)0.56748 (11)0.0317 (6)
C30.4316 (4)0.7585 (3)0.61943 (12)0.0388 (7)
H30.48670.66580.61700.047*
C40.4142 (4)0.8134 (3)0.67321 (12)0.0397 (7)
H40.45730.75830.70690.048*
C50.3323 (4)0.9515 (3)0.67803 (12)0.0383 (7)
C60.2709 (4)1.0331 (3)0.62901 (12)0.0380 (7)
H60.21691.12570.63270.046*
C70.2211 (3)1.0744 (3)0.52380 (12)0.0339 (6)
H70.17151.16630.53170.041*
C80.1576 (4)1.1552 (3)0.42524 (12)0.0383 (7)
H8A0.22521.24760.43180.046*
H8B0.03851.17930.42790.046*
C90.1674 (3)1.0935 (3)0.36544 (12)0.0323 (6)
C100.1044 (4)1.1749 (3)0.31527 (13)0.0443 (7)
H100.05291.26930.31770.053*
C110.1198 (4)1.1132 (4)0.26167 (13)0.0486 (8)
H110.07731.16510.22720.058*
C120.1979 (4)0.9748 (4)0.25938 (13)0.0470 (8)
H120.20960.93210.22340.056*
C130.2586 (4)0.9002 (3)0.31071 (13)0.0420 (7)
H130.31220.80660.30900.050*
H6A0.773 (3)0.535 (3)0.4574 (12)0.045 (10)*
H2A0.362 (5)0.633 (4)0.3958 (16)0.067 (14)*
H2B0.502 (5)0.656 (4)0.4284 (15)0.047 (12)*
H6B0.657 (5)0.452 (2)0.4820 (18)0.100 (16)*
U11U22U33U12U13U23
Cu10.0389 (2)0.02223 (18)0.03751 (19)0.00418 (15)0.00787 (14)−0.00095 (14)
Cl10.0715 (6)0.0575 (5)0.0400 (4)−0.0038 (4)0.0120 (4)−0.0117 (4)
N10.0343 (12)0.0188 (11)0.0396 (12)0.0034 (9)0.0045 (10)0.0015 (9)
N20.0384 (13)0.0257 (12)0.0381 (12)−0.0011 (10)0.0063 (10)0.0001 (10)
N30.0444 (16)0.0418 (16)0.0400 (13)−0.0038 (13)0.0014 (11)0.0011 (12)
O10.0533 (12)0.0250 (10)0.0385 (10)0.0094 (9)0.0100 (9)−0.0021 (8)
O20.0399 (14)0.0312 (12)0.0468 (13)0.0071 (11)0.0079 (11)−0.0014 (11)
O30.0568 (14)0.0522 (14)0.0567 (13)−0.0071 (11)0.0214 (11)−0.0186 (11)
O40.0560 (16)0.082 (2)0.095 (2)−0.0297 (15)0.0250 (14)−0.0259 (16)
O50.0533 (14)0.0371 (13)0.0913 (17)0.0026 (11)0.0211 (13)−0.0148 (13)
O60.0554 (15)0.0354 (13)0.0579 (14)0.0075 (11)0.0067 (12)−0.0017 (11)
C10.0319 (15)0.0227 (13)0.0401 (14)−0.0018 (11)0.0063 (12)−0.0035 (11)
C20.0319 (15)0.0252 (14)0.0382 (14)−0.0022 (11)0.0064 (11)−0.0022 (11)
C30.0438 (17)0.0255 (15)0.0464 (16)0.0020 (13)0.0057 (13)0.0011 (12)
C40.0437 (18)0.0359 (16)0.0385 (15)−0.0040 (13)0.0042 (13)0.0042 (13)
C50.0402 (17)0.0370 (17)0.0390 (15)−0.0085 (13)0.0099 (12)−0.0094 (13)
C60.0402 (17)0.0297 (15)0.0451 (16)0.0001 (13)0.0099 (13)−0.0076 (13)
C70.0329 (15)0.0230 (13)0.0460 (16)0.0026 (12)0.0073 (12)−0.0037 (12)
C80.0460 (17)0.0240 (14)0.0438 (15)0.0078 (13)0.0040 (13)0.0021 (12)
C90.0283 (14)0.0245 (13)0.0429 (15)−0.0029 (11)0.0021 (12)−0.0002 (12)
C100.0478 (19)0.0321 (16)0.0468 (17)0.0032 (14)−0.0100 (14)0.0017 (13)
C110.056 (2)0.0434 (19)0.0400 (16)−0.0029 (16)−0.0088 (14)0.0048 (14)
C120.053 (2)0.0446 (19)0.0403 (16)−0.0076 (16)−0.0013 (14)−0.0066 (14)
C130.0471 (18)0.0327 (16)0.0459 (17)0.0002 (13)0.0074 (14)−0.0042 (13)
Cu1—O11.8925 (18)C2—C31.404 (4)
Cu1—N11.932 (2)C3—C41.360 (4)
Cu1—O21.970 (2)C3—H30.9300
Cu1—N21.981 (2)C4—C51.389 (4)
Cl1—C51.735 (3)C4—H40.9300
N1—C71.277 (3)C5—C61.359 (4)
N1—C81.463 (3)C6—H60.9300
N2—C91.340 (3)C7—H70.9300
N2—C131.345 (3)C8—C91.497 (4)
N3—O41.227 (3)C8—H8A0.9700
N3—O31.241 (3)C8—H8B0.9700
N3—O51.251 (3)C9—C101.381 (4)
O1—C21.314 (3)C10—C111.375 (4)
O2—H2A0.81 (4)C10—H100.9300
O2—H2B0.71 (4)C11—C121.371 (4)
O6—H6A0.839 (10)C11—H110.9300
O6—H6B0.845 (10)C12—C131.368 (4)
C1—C61.403 (4)C12—H120.9300
C1—C21.419 (3)C13—H130.9300
C1—C71.434 (4)
O1—Cu1—N194.00 (8)C5—C4—H4119.9
O1—Cu1—O289.27 (9)C6—C5—C4120.1 (3)
N1—Cu1—O2171.71 (10)C6—C5—Cl1121.2 (2)
O1—Cu1—N2176.94 (8)C4—C5—Cl1118.7 (2)
N1—Cu1—N283.13 (9)C5—C6—C1121.0 (3)
O2—Cu1—N293.43 (10)C5—C6—H6119.5
C7—N1—C8118.4 (2)C1—C6—H6119.5
C7—N1—Cu1126.06 (19)N1—C7—C1125.3 (2)
C8—N1—Cu1115.50 (16)N1—C7—H7117.3
C9—N2—C13118.3 (2)C1—C7—H7117.3
C9—N2—Cu1114.98 (18)N1—C8—C9109.7 (2)
C13—N2—Cu1126.67 (19)N1—C8—H8A109.7
O4—N3—O3118.9 (3)C9—C8—H8A109.7
O4—N3—O5120.7 (3)N1—C8—H8B109.7
O3—N3—O5120.3 (3)C9—C8—H8B109.7
C2—O1—Cu1127.32 (17)H8A—C8—H8B108.2
Cu1—O2—H2A105 (3)N2—C9—C10122.3 (3)
Cu1—O2—H2B115 (3)N2—C9—C8116.5 (2)
H2A—O2—H2B108 (4)C10—C9—C8121.2 (2)
H6A—O6—H6B109 (2)C11—C10—C9118.4 (3)
C6—C1—C2119.3 (2)C11—C10—H10120.8
C6—C1—C7117.2 (2)C9—C10—H10120.8
C2—C1—C7123.5 (2)C12—C11—C10119.6 (3)
O1—C2—C3118.7 (2)C12—C11—H11120.2
O1—C2—C1123.8 (2)C10—C11—H11120.2
C3—C2—C1117.5 (2)C13—C12—C11119.1 (3)
C4—C3—C2121.8 (3)C13—C12—H12120.4
C4—C3—H3119.1C11—C12—H12120.4
C2—C3—H3119.1N2—C13—C12122.2 (3)
C3—C4—C5120.2 (3)N2—C13—H13118.9
C3—C4—H4119.9C12—C13—H13118.9
D—H···AD—HH···AD···AD—H···A
O6—H6B···O1i0.85 (1)2.06 (1)2.887 (3)167 (3)
O2—H2B···O60.71 (4)1.98 (4)2.681 (4)172 (4)
O2—H2A···O50.81 (4)2.63 (4)3.078 (3)116 (3)
O2—H2A···O30.81 (4)1.85 (4)2.652 (4)170 (4)
O6—H6A···O4ii0.84 (1)2.02 (1)2.831 (3)162 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O6—H6B⋯O1i0.85 (1)2.06 (1)2.887 (3)167 (3)
O2—H2B⋯O60.71 (4)1.98 (4)2.681 (4)172 (4)
O2—H2A⋯O50.81 (4)2.63 (4)3.078 (3)116 (3)
O2—H2A⋯O30.81 (4)1.85 (4)2.652 (4)170 (4)
O6—H6A⋯O4ii0.84 (1)2.02 (1)2.831 (3)162 (3)

Symmetry codes: (i) ; (ii) .

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