| Literature DB >> 22412424 |
Jing Yu1.
Abstract
The title complex, [Cu(C(13)H(10)ClN(2)O)(H(2)O)]NO(3)·H(2)O, was obtained by the reaction of 5-chloro-salicyl-aldehyde, 2-(amino-meth-yl)pyridine and copper nitrate in methanol. The first reported polymorph of this complex was triclinic [Liang et al. (2010 ▶). Acta Cryst. E66, m40]. The present polymorph crystallized in the monoclinic space group P2(1)/c. The Cu(II) ion is in a square planar environment and is coordinated by one phenolate O, one imine N and one pyridine N atom of the tridentate Schiff base ligand and by one water O atom. In the crystal, mol-ecules are linked through inter-molecular O-H⋯O hydrogen bonds to form chains along the a axis.Entities:
Year: 2012 PMID: 22412424 PMCID: PMC3297234 DOI: 10.1107/S1600536812004564
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu(C13H10ClN2O)(H2O)]NO3·H2O | |
| Monoclinic, | Mo |
| Cell parameters from 3984 reflections | |
| θ = 2.5–26.9° | |
| µ = 1.60 mm−1 | |
| β = 99.680 (2)° | |
| Block, blue | |
| 0.22 × 0.20 × 0.19 mm |
| Bruker SMART 1K CCD area-detector diffractometer | 3410 independent reflections |
| Radiation source: fine-focus sealed tube | 2647 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 27.0°, θmin = 2.5° |
| Absorption correction: multi-scan ( | |
| 12290 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3410 reflections | (Δ/σ)max < 0.001 |
| 233 parameters | Δρmax = 0.39 e Å−3 |
| 3 restraints | Δρmin = −0.48 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cu1 | 0.31780 (4) | 0.86046 (4) | 0.441029 (14) | 0.03273 (12) | |
| Cl1 | 0.30943 (12) | 1.01565 (10) | 0.74737 (3) | 0.0561 (2) | |
| N1 | 0.2244 (3) | 1.0428 (2) | 0.46999 (9) | 0.0311 (5) | |
| N2 | 0.2433 (3) | 0.9578 (2) | 0.36353 (9) | 0.0341 (5) | |
| N3 | 0.0449 (3) | 0.5644 (3) | 0.39668 (10) | 0.0427 (6) | |
| O1 | 0.3889 (3) | 0.7778 (2) | 0.51693 (8) | 0.0387 (5) | |
| O2 | 0.4383 (4) | 0.6939 (3) | 0.40783 (11) | 0.0392 (5) | |
| O3 | 0.1648 (3) | 0.5200 (3) | 0.37200 (10) | 0.0539 (6) | |
| O4 | −0.0834 (3) | 0.4839 (3) | 0.39510 (12) | 0.0764 (8) | |
| O5 | 0.0556 (3) | 0.6892 (3) | 0.42285 (11) | 0.0595 (6) | |
| O6 | 0.6908 (3) | 0.5408 (3) | 0.47630 (10) | 0.0499 (5) | |
| C1 | 0.2878 (3) | 0.9799 (3) | 0.57295 (12) | 0.0315 (6) | |
| C2 | 0.3686 (3) | 0.8378 (3) | 0.56748 (11) | 0.0317 (6) | |
| C3 | 0.4316 (4) | 0.7585 (3) | 0.61943 (12) | 0.0388 (7) | |
| H3 | 0.4867 | 0.6658 | 0.6170 | 0.047* | |
| C4 | 0.4142 (4) | 0.8134 (3) | 0.67321 (12) | 0.0397 (7) | |
| H4 | 0.4573 | 0.7583 | 0.7069 | 0.048* | |
| C5 | 0.3323 (4) | 0.9515 (3) | 0.67803 (12) | 0.0383 (7) | |
| C6 | 0.2709 (4) | 1.0331 (3) | 0.62901 (12) | 0.0380 (7) | |
| H6 | 0.2169 | 1.1257 | 0.6327 | 0.046* | |
| C7 | 0.2211 (3) | 1.0744 (3) | 0.52380 (12) | 0.0339 (6) | |
| H7 | 0.1715 | 1.1663 | 0.5317 | 0.041* | |
| C8 | 0.1576 (4) | 1.1552 (3) | 0.42524 (12) | 0.0383 (7) | |
| H8A | 0.2252 | 1.2476 | 0.4318 | 0.046* | |
| H8B | 0.0385 | 1.1793 | 0.4279 | 0.046* | |
| C9 | 0.1674 (3) | 1.0935 (3) | 0.36544 (12) | 0.0323 (6) | |
| C10 | 0.1044 (4) | 1.1749 (3) | 0.31527 (13) | 0.0443 (7) | |
| H10 | 0.0529 | 1.2693 | 0.3177 | 0.053* | |
| C11 | 0.1198 (4) | 1.1132 (4) | 0.26167 (13) | 0.0486 (8) | |
| H11 | 0.0773 | 1.1651 | 0.2272 | 0.058* | |
| C12 | 0.1979 (4) | 0.9748 (4) | 0.25938 (13) | 0.0470 (8) | |
| H12 | 0.2096 | 0.9321 | 0.2234 | 0.056* | |
| C13 | 0.2586 (4) | 0.9002 (3) | 0.31071 (13) | 0.0420 (7) | |
| H13 | 0.3122 | 0.8066 | 0.3090 | 0.050* | |
| H6A | 0.773 (3) | 0.535 (3) | 0.4574 (12) | 0.045 (10)* | |
| H2A | 0.362 (5) | 0.633 (4) | 0.3958 (16) | 0.067 (14)* | |
| H2B | 0.502 (5) | 0.656 (4) | 0.4284 (15) | 0.047 (12)* | |
| H6B | 0.657 (5) | 0.452 (2) | 0.4820 (18) | 0.100 (16)* |
| Cu1 | 0.0389 (2) | 0.02223 (18) | 0.03751 (19) | 0.00418 (15) | 0.00787 (14) | −0.00095 (14) |
| Cl1 | 0.0715 (6) | 0.0575 (5) | 0.0400 (4) | −0.0038 (4) | 0.0120 (4) | −0.0117 (4) |
| N1 | 0.0343 (12) | 0.0188 (11) | 0.0396 (12) | 0.0034 (9) | 0.0045 (10) | 0.0015 (9) |
| N2 | 0.0384 (13) | 0.0257 (12) | 0.0381 (12) | −0.0011 (10) | 0.0063 (10) | 0.0001 (10) |
| N3 | 0.0444 (16) | 0.0418 (16) | 0.0400 (13) | −0.0038 (13) | 0.0014 (11) | 0.0011 (12) |
| O1 | 0.0533 (12) | 0.0250 (10) | 0.0385 (10) | 0.0094 (9) | 0.0100 (9) | −0.0021 (8) |
| O2 | 0.0399 (14) | 0.0312 (12) | 0.0468 (13) | 0.0071 (11) | 0.0079 (11) | −0.0014 (11) |
| O3 | 0.0568 (14) | 0.0522 (14) | 0.0567 (13) | −0.0071 (11) | 0.0214 (11) | −0.0186 (11) |
| O4 | 0.0560 (16) | 0.082 (2) | 0.095 (2) | −0.0297 (15) | 0.0250 (14) | −0.0259 (16) |
| O5 | 0.0533 (14) | 0.0371 (13) | 0.0913 (17) | 0.0026 (11) | 0.0211 (13) | −0.0148 (13) |
| O6 | 0.0554 (15) | 0.0354 (13) | 0.0579 (14) | 0.0075 (11) | 0.0067 (12) | −0.0017 (11) |
| C1 | 0.0319 (15) | 0.0227 (13) | 0.0401 (14) | −0.0018 (11) | 0.0063 (12) | −0.0035 (11) |
| C2 | 0.0319 (15) | 0.0252 (14) | 0.0382 (14) | −0.0022 (11) | 0.0064 (11) | −0.0022 (11) |
| C3 | 0.0438 (17) | 0.0255 (15) | 0.0464 (16) | 0.0020 (13) | 0.0057 (13) | 0.0011 (12) |
| C4 | 0.0437 (18) | 0.0359 (16) | 0.0385 (15) | −0.0040 (13) | 0.0042 (13) | 0.0042 (13) |
| C5 | 0.0402 (17) | 0.0370 (17) | 0.0390 (15) | −0.0085 (13) | 0.0099 (12) | −0.0094 (13) |
| C6 | 0.0402 (17) | 0.0297 (15) | 0.0451 (16) | 0.0001 (13) | 0.0099 (13) | −0.0076 (13) |
| C7 | 0.0329 (15) | 0.0230 (13) | 0.0460 (16) | 0.0026 (12) | 0.0073 (12) | −0.0037 (12) |
| C8 | 0.0460 (17) | 0.0240 (14) | 0.0438 (15) | 0.0078 (13) | 0.0040 (13) | 0.0021 (12) |
| C9 | 0.0283 (14) | 0.0245 (13) | 0.0429 (15) | −0.0029 (11) | 0.0021 (12) | −0.0002 (12) |
| C10 | 0.0478 (19) | 0.0321 (16) | 0.0468 (17) | 0.0032 (14) | −0.0100 (14) | 0.0017 (13) |
| C11 | 0.056 (2) | 0.0434 (19) | 0.0400 (16) | −0.0029 (16) | −0.0088 (14) | 0.0048 (14) |
| C12 | 0.053 (2) | 0.0446 (19) | 0.0403 (16) | −0.0076 (16) | −0.0013 (14) | −0.0066 (14) |
| C13 | 0.0471 (18) | 0.0327 (16) | 0.0459 (17) | 0.0002 (13) | 0.0074 (14) | −0.0042 (13) |
| Cu1—O1 | 1.8925 (18) | C2—C3 | 1.404 (4) |
| Cu1—N1 | 1.932 (2) | C3—C4 | 1.360 (4) |
| Cu1—O2 | 1.970 (2) | C3—H3 | 0.9300 |
| Cu1—N2 | 1.981 (2) | C4—C5 | 1.389 (4) |
| Cl1—C5 | 1.735 (3) | C4—H4 | 0.9300 |
| N1—C7 | 1.277 (3) | C5—C6 | 1.359 (4) |
| N1—C8 | 1.463 (3) | C6—H6 | 0.9300 |
| N2—C9 | 1.340 (3) | C7—H7 | 0.9300 |
| N2—C13 | 1.345 (3) | C8—C9 | 1.497 (4) |
| N3—O4 | 1.227 (3) | C8—H8A | 0.9700 |
| N3—O3 | 1.241 (3) | C8—H8B | 0.9700 |
| N3—O5 | 1.251 (3) | C9—C10 | 1.381 (4) |
| O1—C2 | 1.314 (3) | C10—C11 | 1.375 (4) |
| O2—H2A | 0.81 (4) | C10—H10 | 0.9300 |
| O2—H2B | 0.71 (4) | C11—C12 | 1.371 (4) |
| O6—H6A | 0.839 (10) | C11—H11 | 0.9300 |
| O6—H6B | 0.845 (10) | C12—C13 | 1.368 (4) |
| C1—C6 | 1.403 (4) | C12—H12 | 0.9300 |
| C1—C2 | 1.419 (3) | C13—H13 | 0.9300 |
| C1—C7 | 1.434 (4) | ||
| O1—Cu1—N1 | 94.00 (8) | C5—C4—H4 | 119.9 |
| O1—Cu1—O2 | 89.27 (9) | C6—C5—C4 | 120.1 (3) |
| N1—Cu1—O2 | 171.71 (10) | C6—C5—Cl1 | 121.2 (2) |
| O1—Cu1—N2 | 176.94 (8) | C4—C5—Cl1 | 118.7 (2) |
| N1—Cu1—N2 | 83.13 (9) | C5—C6—C1 | 121.0 (3) |
| O2—Cu1—N2 | 93.43 (10) | C5—C6—H6 | 119.5 |
| C7—N1—C8 | 118.4 (2) | C1—C6—H6 | 119.5 |
| C7—N1—Cu1 | 126.06 (19) | N1—C7—C1 | 125.3 (2) |
| C8—N1—Cu1 | 115.50 (16) | N1—C7—H7 | 117.3 |
| C9—N2—C13 | 118.3 (2) | C1—C7—H7 | 117.3 |
| C9—N2—Cu1 | 114.98 (18) | N1—C8—C9 | 109.7 (2) |
| C13—N2—Cu1 | 126.67 (19) | N1—C8—H8A | 109.7 |
| O4—N3—O3 | 118.9 (3) | C9—C8—H8A | 109.7 |
| O4—N3—O5 | 120.7 (3) | N1—C8—H8B | 109.7 |
| O3—N3—O5 | 120.3 (3) | C9—C8—H8B | 109.7 |
| C2—O1—Cu1 | 127.32 (17) | H8A—C8—H8B | 108.2 |
| Cu1—O2—H2A | 105 (3) | N2—C9—C10 | 122.3 (3) |
| Cu1—O2—H2B | 115 (3) | N2—C9—C8 | 116.5 (2) |
| H2A—O2—H2B | 108 (4) | C10—C9—C8 | 121.2 (2) |
| H6A—O6—H6B | 109 (2) | C11—C10—C9 | 118.4 (3) |
| C6—C1—C2 | 119.3 (2) | C11—C10—H10 | 120.8 |
| C6—C1—C7 | 117.2 (2) | C9—C10—H10 | 120.8 |
| C2—C1—C7 | 123.5 (2) | C12—C11—C10 | 119.6 (3) |
| O1—C2—C3 | 118.7 (2) | C12—C11—H11 | 120.2 |
| O1—C2—C1 | 123.8 (2) | C10—C11—H11 | 120.2 |
| C3—C2—C1 | 117.5 (2) | C13—C12—C11 | 119.1 (3) |
| C4—C3—C2 | 121.8 (3) | C13—C12—H12 | 120.4 |
| C4—C3—H3 | 119.1 | C11—C12—H12 | 120.4 |
| C2—C3—H3 | 119.1 | N2—C13—C12 | 122.2 (3) |
| C3—C4—C5 | 120.2 (3) | N2—C13—H13 | 118.9 |
| C3—C4—H4 | 119.9 | C12—C13—H13 | 118.9 |
| H··· | ||||
| O6—H6 | 0.85 (1) | 2.06 (1) | 2.887 (3) | 167 (3) |
| O2—H2 | 0.71 (4) | 1.98 (4) | 2.681 (4) | 172 (4) |
| O2—H2 | 0.81 (4) | 2.63 (4) | 3.078 (3) | 116 (3) |
| O2—H2 | 0.81 (4) | 1.85 (4) | 2.652 (4) | 170 (4) |
| O6—H6 | 0.84 (1) | 2.02 (1) | 2.831 (3) | 162 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O6—H6 | 0.85 (1) | 2.06 (1) | 2.887 (3) | 167 (3) |
| O2—H2 | 0.71 (4) | 1.98 (4) | 2.681 (4) | 172 (4) |
| O2—H2 | 0.81 (4) | 2.63 (4) | 3.078 (3) | 116 (3) |
| O2—H2 | 0.81 (4) | 1.85 (4) | 2.652 (4) | 170 (4) |
| O6—H6 | 0.84 (1) | 2.02 (1) | 2.831 (3) | 162 (3) |
Symmetry codes: (i) ; (ii) .