Literature DB >> 24109280

Aqua-bis-(3-chloro-benzoato-κO)bis-(N,N-di-ethyl-nicotinamide-κN)copper(II).

Nihat Bozkurt1, Tuncay Tunç, Nagihan Caylak Delibaş, Hacali Necefoğlu, Tuncer Hökelek.   

Abstract

The title compound, [Cu(C7H4ClO2)2(C10H14N2O)2(H2O)], has twofold symmetry with the Cu(II) cation and the O atom of the coordinating water mol-ecule located on the axis. The Cu(II) cation is coordinated by two carboxyl-ate O atoms of chloro-benzoate (CB) anions, two N atoms of N,N-di-ethyl-nicotinamide (DENA) ligands and one water mol-ecule in a distorted N2O3 square-pyramidal geometry. The benzene and pyridine rings are oriented at a dihedral angle of 82.51 (6)°. In the anionic ligand, the carboxyl-ate group is twisted away from the attached benzene ring by 12.85 (11)°. In the crystal, O-H⋯O hydrogen bonds between the coordinating water mol-ecule and the carboxyl group link the complex mol-ecules into supra-molecular chains running along the c-axis direction.

Entities:  

Year:  2013        PMID: 24109280      PMCID: PMC3793693          DOI: 10.1107/S1600536813018989

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For literature on niacin, see: Krishnamachari (1974 ▶). For information on the nicotinic acid derivative N,N-di­ethyl­nicotinamide, see: Bigoli et al. (1972 ▶). For related structures, see: Hökelek et al. (1996 ▶, 2009a ▶,b ▶); Hökelek & Necefoğlu (1998 ▶, 2007 ▶); Necefoğlu et al. (2011a ▶,b ▶,c ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

[Cu(C7H4ClO2)2(C10H14N2O)2(H2O)] M = 749.13 Orthorhombic, a = 15.9185 (9) Å b = 19.2366 (11) Å c = 11.5535 (7) Å V = 3537.9 (4) Å3 Z = 4 Mo Kα radiation μ = 0.82 mm−1 T = 296 K 0.35 × 0.20 × 0.15 mm

Data collection

Bruker SMART BREEZE CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2012 ▶) T min = 0.821, T max = 0.884 75834 measured reflections 6232 independent reflections 5189 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.086 S = 1.06 6232 reflections 224 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.39 e Å−3 Absolute structure: Flack (1983 ▶), with no Friedel pairs measured Flack parameter: 0.027 (10) Data collection: APEX2 (Bruker, 2012 ▶); cell refinement: SAINT (Bruker, 2012 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813018989/xu5719sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813018989/xu5719Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C7H4ClO2)2(C10H14N2O)2(H2O)]F(000) = 1556
Mr = 749.13Dx = 1.406 Mg m3
Orthorhombic, Iba2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: I 2 -2cCell parameters from 9278 reflections
a = 15.9185 (9) Åθ = 2.2–30.7°
b = 19.2366 (11) ŵ = 0.82 mm1
c = 11.5535 (7) ÅT = 296 K
V = 3537.9 (4) Å3Block, blue
Z = 40.35 × 0.20 × 0.15 mm
Bruker SMART BREEZE CCD diffractometer6232 independent reflections
Radiation source: fine-focus sealed tube5189 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.048
φ and ω scansθmax = 32.3°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2012)h = −23→23
Tmin = 0.821, Tmax = 0.884k = −28→28
75834 measured reflectionsl = −17→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.032H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.086w = 1/[σ2(Fo2) + (0.049P)2 + 0.4582P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.002
6232 reflectionsΔρmax = 0.25 e Å3
224 parametersΔρmin = −0.39 e Å3
1 restraintAbsolute structure: Flack (1983), with no Friedel pairs measured
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.027 (10)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu11.00000.50000.41873 (3)0.03000 (6)
Cl11.46828 (3)0.59979 (3)0.63513 (5)0.06445 (15)
O11.11786 (6)0.52434 (6)0.41852 (13)0.0393 (2)
O21.14688 (8)0.52348 (10)0.60832 (13)0.0614 (4)
O30.84439 (11)0.72659 (11)0.16031 (16)0.0800 (5)
O41.00000.50000.22505 (18)0.0538 (6)
H411.0395 (19)0.4937 (15)0.185 (4)0.083 (10)*
N10.96843 (7)0.60210 (6)0.42656 (14)0.0353 (2)
N20.74305 (10)0.72799 (9)0.29566 (14)0.0469 (3)
C11.16668 (9)0.52875 (9)0.50510 (15)0.0363 (3)
C21.25768 (9)0.54254 (8)0.47400 (14)0.0349 (3)
C31.31396 (9)0.56202 (9)0.56019 (15)0.0391 (3)
H31.29640.56730.63640.047*
C41.39704 (10)0.57329 (8)0.52927 (16)0.0414 (3)
C51.42506 (9)0.56541 (8)0.4176 (2)0.0469 (3)
H51.48120.57290.39920.056*
C61.36773 (12)0.54600 (10)0.33236 (19)0.0514 (4)
H61.38570.54030.25630.062*
C71.28426 (11)0.53510 (9)0.36030 (17)0.0422 (4)
H71.24600.52280.30300.051*
C80.90811 (10)0.62540 (8)0.35534 (15)0.0372 (3)
H80.88020.59360.30840.045*
C90.88569 (10)0.69476 (8)0.34881 (14)0.0398 (3)
C100.92796 (12)0.74174 (8)0.4190 (2)0.0510 (4)
H100.91460.78880.41610.061*
C110.99002 (12)0.71828 (10)0.4931 (2)0.0509 (4)
H111.01880.74900.54090.061*
C121.00827 (10)0.64755 (10)0.49440 (18)0.0412 (3)
H121.04970.63140.54430.049*
C130.82193 (13)0.71794 (10)0.26044 (15)0.0462 (4)
C140.71426 (12)0.71772 (12)0.4142 (2)0.0551 (4)
H14A0.67840.75630.43610.066*
H14B0.76250.71770.46560.066*
C150.6667 (2)0.65112 (17)0.4298 (3)0.0907 (8)
H15A0.64540.64860.50740.136*
H15B0.70360.61250.41590.136*
H15C0.62080.64960.37600.136*
C160.68061 (14)0.75374 (11)0.2115 (2)0.0546 (5)
H16A0.62550.73630.23250.066*
H16B0.69430.73580.13530.066*
C170.6778 (2)0.83180 (13)0.2067 (3)0.0864 (9)
H17A0.64050.84620.14610.130*
H17B0.73320.84950.19160.130*
H17C0.65810.84960.27950.130*
U11U22U33U12U13U23
Cu10.02380 (9)0.03532 (10)0.03087 (11)0.00119 (8)0.0000.000
Cl10.0404 (2)0.0777 (3)0.0752 (4)−0.0116 (2)−0.0184 (2)0.0065 (3)
O10.0265 (4)0.0465 (5)0.0449 (5)−0.0019 (4)−0.0005 (5)−0.0018 (7)
O20.0334 (6)0.1087 (12)0.0420 (7)−0.0084 (7)0.0062 (5)0.0074 (8)
O30.0700 (10)0.1258 (14)0.0442 (8)0.0380 (10)0.0141 (8)0.0253 (10)
O40.0329 (9)0.1020 (18)0.0265 (10)0.0133 (9)0.0000.000
N10.0290 (5)0.0383 (5)0.0385 (7)0.0010 (4)0.0002 (6)−0.0028 (6)
N20.0421 (7)0.0617 (8)0.0369 (7)0.0086 (6)−0.0025 (6)−0.0013 (7)
C10.0271 (6)0.0404 (8)0.0414 (8)0.0011 (5)0.0034 (5)0.0022 (6)
C20.0259 (6)0.0380 (7)0.0408 (8)0.0008 (5)0.0023 (6)0.0036 (6)
C30.0304 (6)0.0462 (8)0.0409 (8)−0.0006 (6)−0.0011 (6)0.0060 (6)
C40.0292 (6)0.0394 (7)0.0556 (10)−0.0005 (6)−0.0050 (6)0.0073 (7)
C50.0283 (6)0.0440 (7)0.0683 (10)−0.0026 (5)0.0105 (8)0.0012 (10)
C60.0425 (9)0.0593 (10)0.0523 (11)−0.0073 (7)0.0181 (8)−0.0060 (8)
C70.0353 (7)0.0488 (9)0.0426 (9)−0.0033 (6)0.0052 (7)−0.0042 (7)
C80.0340 (7)0.0392 (7)0.0385 (8)0.0023 (5)−0.0017 (6)−0.0016 (6)
C90.0390 (7)0.0417 (7)0.0389 (8)0.0065 (6)0.0043 (6)0.0030 (6)
C100.0548 (9)0.0352 (6)0.0631 (10)0.0041 (6)0.0000 (11)−0.0029 (10)
C110.0458 (9)0.0426 (9)0.0643 (12)−0.0027 (7)−0.0054 (8)−0.0141 (8)
C120.0339 (7)0.0463 (8)0.0435 (9)0.0026 (6)−0.0029 (6)−0.0071 (7)
C130.0503 (9)0.0505 (9)0.0377 (9)0.0151 (8)0.0031 (7)0.0035 (7)
C140.0438 (8)0.0812 (12)0.0405 (8)0.0058 (8)0.0010 (9)−0.0060 (12)
C150.099 (2)0.0903 (18)0.0825 (19)−0.0149 (15)0.0178 (19)0.0077 (18)
C160.0501 (10)0.0630 (11)0.0508 (10)0.0082 (8)−0.0108 (8)−0.0045 (9)
C170.094 (2)0.0615 (13)0.104 (2)0.0226 (13)−0.0383 (17)−0.0114 (14)
Cu1—N12.0294 (12)C7—H70.9300
Cu1—N1i2.0294 (12)C8—H80.9300
Cu1—O11.9337 (10)C9—C81.383 (2)
Cu1—O1i1.9337 (10)C9—C101.388 (3)
Cu1—O42.238 (2)C9—C131.507 (2)
Cl1—C41.7439 (18)C10—C111.383 (3)
O1—C11.269 (2)C10—H100.9300
O4—H410.79 (4)C11—H110.9300
N1—C81.341 (2)C12—C111.391 (3)
N1—C121.335 (2)C12—H120.9300
N2—C131.334 (2)C13—O31.222 (2)
N2—C141.458 (3)C14—C151.499 (4)
N2—C161.476 (3)C14—H14A0.9700
C1—O21.238 (2)C14—H14B0.9700
C1—C21.516 (2)C15—H15A0.9600
C2—C31.391 (2)C15—H15B0.9600
C2—C71.387 (2)C15—H15C0.9600
C3—C41.387 (2)C16—C171.503 (3)
C3—H30.9300C16—H16A0.9700
C5—C41.373 (3)C16—H16B0.9700
C5—C61.394 (3)C17—H17A0.9600
C5—H50.9300C17—H17B0.9600
C6—H60.9300C17—H17C0.9600
C7—C61.383 (2)
O1—Cu1—O1i179.86 (9)C9—C8—H8118.6
O1—Cu1—O489.93 (5)C8—C9—C10118.11 (16)
O1i—Cu1—O489.93 (5)C8—C9—C13119.75 (16)
O1—Cu1—N190.35 (5)C10—C9—C13121.96 (15)
O1i—Cu1—N189.66 (5)C9—C10—H10120.2
O1—Cu1—N1i89.66 (5)C11—C10—C9119.69 (15)
O1i—Cu1—N1i90.35 (5)C11—C10—H10120.2
N1—Cu1—O492.55 (5)C10—C11—C12118.36 (17)
N1i—Cu1—O492.55 (5)C10—C11—H11120.8
N1i—Cu1—N1174.89 (9)C12—C11—H11120.8
C1—O1—Cu1127.53 (12)N1—C12—C11122.34 (17)
Cu1—O4—H41126 (3)N1—C12—H12118.8
C8—N1—Cu1118.25 (11)C11—C12—H12118.8
C12—N1—Cu1122.85 (12)O3—C13—N2122.97 (18)
C12—N1—C8118.79 (13)O3—C13—C9118.98 (17)
C13—N2—C14124.25 (16)N2—C13—C9118.05 (16)
C13—N2—C16118.78 (16)N2—C14—C15112.8 (2)
C14—N2—C16116.93 (15)N2—C14—H14A109.0
O1—C1—C2114.20 (14)N2—C14—H14B109.0
O2—C1—O1126.72 (15)C15—C14—H14A109.0
O2—C1—C2119.08 (15)C15—C14—H14B109.0
C3—C2—C1119.53 (15)H14A—C14—H14B107.8
C7—C2—C1119.85 (14)C14—C15—H15A109.5
C7—C2—C3120.62 (14)C14—C15—H15B109.5
C2—C3—H3120.9C14—C15—H15C109.5
C4—C3—C2118.15 (16)H15A—C15—H15B109.5
C4—C3—H3120.9H15A—C15—H15C109.5
C3—C4—Cl1119.02 (14)H15B—C15—H15C109.5
C5—C4—Cl1118.68 (12)N2—C16—C17112.26 (19)
C5—C4—C3122.30 (16)N2—C16—H16A109.2
C4—C5—C6118.74 (14)N2—C16—H16B109.2
C4—C5—H5120.6C17—C16—H16A109.2
C6—C5—H5120.6C17—C16—H16B109.2
C5—C6—H6119.8H16A—C16—H16B107.9
C7—C6—C5120.31 (18)C16—C17—H17A109.5
C7—C6—H6119.8C16—C17—H17B109.5
C2—C7—H7120.1C16—C17—H17C109.5
C6—C7—C2119.87 (17)H17A—C17—H17B109.5
C6—C7—H7120.1H17A—C17—H17C109.5
N1—C8—C9122.71 (15)H17B—C17—H17C109.5
N1—C8—H8118.6
O4—Cu1—O1—C1−173.97 (13)O1—C1—C2—C7−13.2 (2)
N1—Cu1—O1—C193.48 (14)O2—C1—C2—C3−12.1 (2)
N1i—Cu1—O1—C1−81.41 (14)O2—C1—C2—C7167.34 (19)
O1—Cu1—N1—C8133.82 (13)C1—C2—C3—C4179.08 (15)
O1i—Cu1—N1—C8−46.04 (13)C7—C2—C3—C4−0.4 (2)
O1—Cu1—N1—C12−42.21 (15)C1—C2—C7—C6−178.40 (16)
O1i—Cu1—N1—C12137.94 (15)C3—C2—C7—C61.1 (3)
O4—Cu1—N1—C843.87 (12)C2—C3—C4—Cl1178.47 (12)
O4—Cu1—N1—C12−132.15 (14)C2—C3—C4—C5−0.4 (2)
Cu1—O1—C1—O2−6.0 (3)C6—C5—C4—Cl1−178.34 (14)
Cu1—O1—C1—C2174.59 (9)C6—C5—C4—C30.6 (3)
Cu1—N1—C8—C9−175.86 (13)C4—C5—C6—C70.1 (3)
C12—N1—C8—C90.3 (3)C2—C7—C6—C5−0.9 (3)
Cu1—N1—C12—C11175.38 (16)C10—C9—C8—N10.2 (3)
C8—N1—C12—C11−0.6 (3)C13—C9—C8—N1175.42 (16)
C14—N2—C13—O3179.6 (2)C8—C9—C10—C11−0.5 (3)
C14—N2—C13—C9−0.3 (3)C13—C9—C10—C11−175.56 (19)
C16—N2—C13—O3−2.8 (3)C8—C9—C13—O3−79.9 (3)
C16—N2—C13—C9177.28 (16)C8—C9—C13—N2100.0 (2)
C13—N2—C14—C15−102.9 (3)C10—C9—C13—O395.1 (3)
C16—N2—C14—C1579.5 (3)C10—C9—C13—N2−85.0 (2)
C13—N2—C16—C17−88.5 (3)C9—C10—C11—C120.2 (3)
C14—N2—C16—C1789.2 (3)N1—C12—C11—C100.4 (3)
O1—C1—C2—C3167.34 (15)
D—H···AD—HH···AD···AD—H···A
O4—H41···O2ii0.79 (4)1.95 (3)2.7367 (17)171 (4)
Table 1

Selected bond lengths (Å)

Cu1—N12.0294 (12)
Cu1—O11.9337 (10)
Cu1—O42.238 (2)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O4—H41⋯O2i 0.79 (4)1.95 (3)2.7367 (17)171 (4)

Symmetry code: (i) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Some aspects of copper metabolism in pellagra.

Authors:  K A Krishnamachari
Journal:  Am J Clin Nutr       Date:  1974-02       Impact factor: 7.045

3.  Diaqua-bis-(N,N-diethyl-nicotinamide-κN)bis-(4-ethyl-benzoato-κO)cobalt(II).

Authors:  Hacali Necefoğlu; Ali Maracı; Füreya Elif Ozbek; Barış Tercan; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-22

4.  Diaqua-bis(2-bromo-benzoato-κO)bis-(nicotinamide-κN)zinc(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-30

5.  Diaqua-bis(2-chloro-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-31

6.  Diaqua-bis-(N,N'-diethyl-nicotinamide-κN)bis-(4-ethyl-benzoato-κO)copper(II).

Authors:  Hacali Necefoğlu; Ali Maracı; Vedat Aktaş; Barış Tercan; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-20

7.  Diaqua-bis-(N,N'-diethyl-nicotinamide-κN)bis-(4-fluoro-benzoato-κO)copper(II).

Authors:  Hacali Necefoğlu; Füreya Elif Ozbek; Vijdan Oztürk; Vedat Adıgüzel; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-30

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

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