| Literature DB >> 24109280 |
Nihat Bozkurt1, Tuncay Tunç, Nagihan Caylak Delibaş, Hacali Necefoğlu, Tuncer Hökelek.
Abstract
The title compound, [Cu(C7H4ClO2)2(C10H14N2O)2(H2O)], has twofold symmetry with the Cu(II) cation and the O atom of the coordinating water mol-ecule located on the axis. The Cu(II) cation is coordinated by two carboxyl-ate O atoms of chloro-benzoate (CB) anions, two N atoms of N,N-di-ethyl-nicotinamide (DENA) ligands and one water mol-ecule in a distorted N2O3 square-pyramidal geometry. The benzene and pyridine rings are oriented at a dihedral angle of 82.51 (6)°. In the anionic ligand, the carboxyl-ate group is twisted away from the attached benzene ring by 12.85 (11)°. In the crystal, O-H⋯O hydrogen bonds between the coordinating water mol-ecule and the carboxyl group link the complex mol-ecules into supra-molecular chains running along the c-axis direction.Entities:
Year: 2013 PMID: 24109280 PMCID: PMC3793693 DOI: 10.1107/S1600536813018989
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu(C7H4ClO2)2(C10H14N2O)2(H2O)] | |
| Orthorhombic, | Mo |
| Hall symbol: I 2 -2c | Cell parameters from 9278 reflections |
| θ = 2.2–30.7° | |
| µ = 0.82 mm−1 | |
| Block, blue | |
| 0.35 × 0.20 × 0.15 mm |
| Bruker SMART BREEZE CCD diffractometer | 6232 independent reflections |
| Radiation source: fine-focus sealed tube | 5189 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 32.3°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 75834 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.002 | |
| 6232 reflections | Δρmax = 0.25 e Å−3 |
| 224 parameters | Δρmin = −0.39 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), with no Friedel pairs measured |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.027 (10) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cu1 | 1.0000 | 0.5000 | 0.41873 (3) | 0.03000 (6) | |
| Cl1 | 1.46828 (3) | 0.59979 (3) | 0.63513 (5) | 0.06445 (15) | |
| O1 | 1.11786 (6) | 0.52434 (6) | 0.41852 (13) | 0.0393 (2) | |
| O2 | 1.14688 (8) | 0.52348 (10) | 0.60832 (13) | 0.0614 (4) | |
| O3 | 0.84439 (11) | 0.72659 (11) | 0.16031 (16) | 0.0800 (5) | |
| O4 | 1.0000 | 0.5000 | 0.22505 (18) | 0.0538 (6) | |
| H41 | 1.0395 (19) | 0.4937 (15) | 0.185 (4) | 0.083 (10)* | |
| N1 | 0.96843 (7) | 0.60210 (6) | 0.42656 (14) | 0.0353 (2) | |
| N2 | 0.74305 (10) | 0.72799 (9) | 0.29566 (14) | 0.0469 (3) | |
| C1 | 1.16668 (9) | 0.52875 (9) | 0.50510 (15) | 0.0363 (3) | |
| C2 | 1.25768 (9) | 0.54254 (8) | 0.47400 (14) | 0.0349 (3) | |
| C3 | 1.31396 (9) | 0.56202 (9) | 0.56019 (15) | 0.0391 (3) | |
| H3 | 1.2964 | 0.5673 | 0.6364 | 0.047* | |
| C4 | 1.39704 (10) | 0.57329 (8) | 0.52927 (16) | 0.0414 (3) | |
| C5 | 1.42506 (9) | 0.56541 (8) | 0.4176 (2) | 0.0469 (3) | |
| H5 | 1.4812 | 0.5729 | 0.3992 | 0.056* | |
| C6 | 1.36773 (12) | 0.54600 (10) | 0.33236 (19) | 0.0514 (4) | |
| H6 | 1.3857 | 0.5403 | 0.2563 | 0.062* | |
| C7 | 1.28426 (11) | 0.53510 (9) | 0.36030 (17) | 0.0422 (4) | |
| H7 | 1.2460 | 0.5228 | 0.3030 | 0.051* | |
| C8 | 0.90811 (10) | 0.62540 (8) | 0.35534 (15) | 0.0372 (3) | |
| H8 | 0.8802 | 0.5936 | 0.3084 | 0.045* | |
| C9 | 0.88569 (10) | 0.69476 (8) | 0.34881 (14) | 0.0398 (3) | |
| C10 | 0.92796 (12) | 0.74174 (8) | 0.4190 (2) | 0.0510 (4) | |
| H10 | 0.9146 | 0.7888 | 0.4161 | 0.061* | |
| C11 | 0.99002 (12) | 0.71828 (10) | 0.4931 (2) | 0.0509 (4) | |
| H11 | 1.0188 | 0.7490 | 0.5409 | 0.061* | |
| C12 | 1.00827 (10) | 0.64755 (10) | 0.49440 (18) | 0.0412 (3) | |
| H12 | 1.0497 | 0.6314 | 0.5443 | 0.049* | |
| C13 | 0.82193 (13) | 0.71794 (10) | 0.26044 (15) | 0.0462 (4) | |
| C14 | 0.71426 (12) | 0.71772 (12) | 0.4142 (2) | 0.0551 (4) | |
| H14A | 0.6784 | 0.7563 | 0.4361 | 0.066* | |
| H14B | 0.7625 | 0.7177 | 0.4656 | 0.066* | |
| C15 | 0.6667 (2) | 0.65112 (17) | 0.4298 (3) | 0.0907 (8) | |
| H15A | 0.6454 | 0.6486 | 0.5074 | 0.136* | |
| H15B | 0.7036 | 0.6125 | 0.4159 | 0.136* | |
| H15C | 0.6208 | 0.6496 | 0.3760 | 0.136* | |
| C16 | 0.68061 (14) | 0.75374 (11) | 0.2115 (2) | 0.0546 (5) | |
| H16A | 0.6255 | 0.7363 | 0.2325 | 0.066* | |
| H16B | 0.6943 | 0.7358 | 0.1353 | 0.066* | |
| C17 | 0.6778 (2) | 0.83180 (13) | 0.2067 (3) | 0.0864 (9) | |
| H17A | 0.6405 | 0.8462 | 0.1461 | 0.130* | |
| H17B | 0.7332 | 0.8495 | 0.1916 | 0.130* | |
| H17C | 0.6581 | 0.8496 | 0.2795 | 0.130* |
| Cu1 | 0.02380 (9) | 0.03532 (10) | 0.03087 (11) | 0.00119 (8) | 0.000 | 0.000 |
| Cl1 | 0.0404 (2) | 0.0777 (3) | 0.0752 (4) | −0.0116 (2) | −0.0184 (2) | 0.0065 (3) |
| O1 | 0.0265 (4) | 0.0465 (5) | 0.0449 (5) | −0.0019 (4) | −0.0005 (5) | −0.0018 (7) |
| O2 | 0.0334 (6) | 0.1087 (12) | 0.0420 (7) | −0.0084 (7) | 0.0062 (5) | 0.0074 (8) |
| O3 | 0.0700 (10) | 0.1258 (14) | 0.0442 (8) | 0.0380 (10) | 0.0141 (8) | 0.0253 (10) |
| O4 | 0.0329 (9) | 0.1020 (18) | 0.0265 (10) | 0.0133 (9) | 0.000 | 0.000 |
| N1 | 0.0290 (5) | 0.0383 (5) | 0.0385 (7) | 0.0010 (4) | 0.0002 (6) | −0.0028 (6) |
| N2 | 0.0421 (7) | 0.0617 (8) | 0.0369 (7) | 0.0086 (6) | −0.0025 (6) | −0.0013 (7) |
| C1 | 0.0271 (6) | 0.0404 (8) | 0.0414 (8) | 0.0011 (5) | 0.0034 (5) | 0.0022 (6) |
| C2 | 0.0259 (6) | 0.0380 (7) | 0.0408 (8) | 0.0008 (5) | 0.0023 (6) | 0.0036 (6) |
| C3 | 0.0304 (6) | 0.0462 (8) | 0.0409 (8) | −0.0006 (6) | −0.0011 (6) | 0.0060 (6) |
| C4 | 0.0292 (6) | 0.0394 (7) | 0.0556 (10) | −0.0005 (6) | −0.0050 (6) | 0.0073 (7) |
| C5 | 0.0283 (6) | 0.0440 (7) | 0.0683 (10) | −0.0026 (5) | 0.0105 (8) | 0.0012 (10) |
| C6 | 0.0425 (9) | 0.0593 (10) | 0.0523 (11) | −0.0073 (7) | 0.0181 (8) | −0.0060 (8) |
| C7 | 0.0353 (7) | 0.0488 (9) | 0.0426 (9) | −0.0033 (6) | 0.0052 (7) | −0.0042 (7) |
| C8 | 0.0340 (7) | 0.0392 (7) | 0.0385 (8) | 0.0023 (5) | −0.0017 (6) | −0.0016 (6) |
| C9 | 0.0390 (7) | 0.0417 (7) | 0.0389 (8) | 0.0065 (6) | 0.0043 (6) | 0.0030 (6) |
| C10 | 0.0548 (9) | 0.0352 (6) | 0.0631 (10) | 0.0041 (6) | 0.0000 (11) | −0.0029 (10) |
| C11 | 0.0458 (9) | 0.0426 (9) | 0.0643 (12) | −0.0027 (7) | −0.0054 (8) | −0.0141 (8) |
| C12 | 0.0339 (7) | 0.0463 (8) | 0.0435 (9) | 0.0026 (6) | −0.0029 (6) | −0.0071 (7) |
| C13 | 0.0503 (9) | 0.0505 (9) | 0.0377 (9) | 0.0151 (8) | 0.0031 (7) | 0.0035 (7) |
| C14 | 0.0438 (8) | 0.0812 (12) | 0.0405 (8) | 0.0058 (8) | 0.0010 (9) | −0.0060 (12) |
| C15 | 0.099 (2) | 0.0903 (18) | 0.0825 (19) | −0.0149 (15) | 0.0178 (19) | 0.0077 (18) |
| C16 | 0.0501 (10) | 0.0630 (11) | 0.0508 (10) | 0.0082 (8) | −0.0108 (8) | −0.0045 (9) |
| C17 | 0.094 (2) | 0.0615 (13) | 0.104 (2) | 0.0226 (13) | −0.0383 (17) | −0.0114 (14) |
| Cu1—N1 | 2.0294 (12) | C7—H7 | 0.9300 |
| Cu1—N1i | 2.0294 (12) | C8—H8 | 0.9300 |
| Cu1—O1 | 1.9337 (10) | C9—C8 | 1.383 (2) |
| Cu1—O1i | 1.9337 (10) | C9—C10 | 1.388 (3) |
| Cu1—O4 | 2.238 (2) | C9—C13 | 1.507 (2) |
| Cl1—C4 | 1.7439 (18) | C10—C11 | 1.383 (3) |
| O1—C1 | 1.269 (2) | C10—H10 | 0.9300 |
| O4—H41 | 0.79 (4) | C11—H11 | 0.9300 |
| N1—C8 | 1.341 (2) | C12—C11 | 1.391 (3) |
| N1—C12 | 1.335 (2) | C12—H12 | 0.9300 |
| N2—C13 | 1.334 (2) | C13—O3 | 1.222 (2) |
| N2—C14 | 1.458 (3) | C14—C15 | 1.499 (4) |
| N2—C16 | 1.476 (3) | C14—H14A | 0.9700 |
| C1—O2 | 1.238 (2) | C14—H14B | 0.9700 |
| C1—C2 | 1.516 (2) | C15—H15A | 0.9600 |
| C2—C3 | 1.391 (2) | C15—H15B | 0.9600 |
| C2—C7 | 1.387 (2) | C15—H15C | 0.9600 |
| C3—C4 | 1.387 (2) | C16—C17 | 1.503 (3) |
| C3—H3 | 0.9300 | C16—H16A | 0.9700 |
| C5—C4 | 1.373 (3) | C16—H16B | 0.9700 |
| C5—C6 | 1.394 (3) | C17—H17A | 0.9600 |
| C5—H5 | 0.9300 | C17—H17B | 0.9600 |
| C6—H6 | 0.9300 | C17—H17C | 0.9600 |
| C7—C6 | 1.383 (2) | ||
| O1—Cu1—O1i | 179.86 (9) | C9—C8—H8 | 118.6 |
| O1—Cu1—O4 | 89.93 (5) | C8—C9—C10 | 118.11 (16) |
| O1i—Cu1—O4 | 89.93 (5) | C8—C9—C13 | 119.75 (16) |
| O1—Cu1—N1 | 90.35 (5) | C10—C9—C13 | 121.96 (15) |
| O1i—Cu1—N1 | 89.66 (5) | C9—C10—H10 | 120.2 |
| O1—Cu1—N1i | 89.66 (5) | C11—C10—C9 | 119.69 (15) |
| O1i—Cu1—N1i | 90.35 (5) | C11—C10—H10 | 120.2 |
| N1—Cu1—O4 | 92.55 (5) | C10—C11—C12 | 118.36 (17) |
| N1i—Cu1—O4 | 92.55 (5) | C10—C11—H11 | 120.8 |
| N1i—Cu1—N1 | 174.89 (9) | C12—C11—H11 | 120.8 |
| C1—O1—Cu1 | 127.53 (12) | N1—C12—C11 | 122.34 (17) |
| Cu1—O4—H41 | 126 (3) | N1—C12—H12 | 118.8 |
| C8—N1—Cu1 | 118.25 (11) | C11—C12—H12 | 118.8 |
| C12—N1—Cu1 | 122.85 (12) | O3—C13—N2 | 122.97 (18) |
| C12—N1—C8 | 118.79 (13) | O3—C13—C9 | 118.98 (17) |
| C13—N2—C14 | 124.25 (16) | N2—C13—C9 | 118.05 (16) |
| C13—N2—C16 | 118.78 (16) | N2—C14—C15 | 112.8 (2) |
| C14—N2—C16 | 116.93 (15) | N2—C14—H14A | 109.0 |
| O1—C1—C2 | 114.20 (14) | N2—C14—H14B | 109.0 |
| O2—C1—O1 | 126.72 (15) | C15—C14—H14A | 109.0 |
| O2—C1—C2 | 119.08 (15) | C15—C14—H14B | 109.0 |
| C3—C2—C1 | 119.53 (15) | H14A—C14—H14B | 107.8 |
| C7—C2—C1 | 119.85 (14) | C14—C15—H15A | 109.5 |
| C7—C2—C3 | 120.62 (14) | C14—C15—H15B | 109.5 |
| C2—C3—H3 | 120.9 | C14—C15—H15C | 109.5 |
| C4—C3—C2 | 118.15 (16) | H15A—C15—H15B | 109.5 |
| C4—C3—H3 | 120.9 | H15A—C15—H15C | 109.5 |
| C3—C4—Cl1 | 119.02 (14) | H15B—C15—H15C | 109.5 |
| C5—C4—Cl1 | 118.68 (12) | N2—C16—C17 | 112.26 (19) |
| C5—C4—C3 | 122.30 (16) | N2—C16—H16A | 109.2 |
| C4—C5—C6 | 118.74 (14) | N2—C16—H16B | 109.2 |
| C4—C5—H5 | 120.6 | C17—C16—H16A | 109.2 |
| C6—C5—H5 | 120.6 | C17—C16—H16B | 109.2 |
| C5—C6—H6 | 119.8 | H16A—C16—H16B | 107.9 |
| C7—C6—C5 | 120.31 (18) | C16—C17—H17A | 109.5 |
| C7—C6—H6 | 119.8 | C16—C17—H17B | 109.5 |
| C2—C7—H7 | 120.1 | C16—C17—H17C | 109.5 |
| C6—C7—C2 | 119.87 (17) | H17A—C17—H17B | 109.5 |
| C6—C7—H7 | 120.1 | H17A—C17—H17C | 109.5 |
| N1—C8—C9 | 122.71 (15) | H17B—C17—H17C | 109.5 |
| N1—C8—H8 | 118.6 | ||
| O4—Cu1—O1—C1 | −173.97 (13) | O1—C1—C2—C7 | −13.2 (2) |
| N1—Cu1—O1—C1 | 93.48 (14) | O2—C1—C2—C3 | −12.1 (2) |
| N1i—Cu1—O1—C1 | −81.41 (14) | O2—C1—C2—C7 | 167.34 (19) |
| O1—Cu1—N1—C8 | 133.82 (13) | C1—C2—C3—C4 | 179.08 (15) |
| O1i—Cu1—N1—C8 | −46.04 (13) | C7—C2—C3—C4 | −0.4 (2) |
| O1—Cu1—N1—C12 | −42.21 (15) | C1—C2—C7—C6 | −178.40 (16) |
| O1i—Cu1—N1—C12 | 137.94 (15) | C3—C2—C7—C6 | 1.1 (3) |
| O4—Cu1—N1—C8 | 43.87 (12) | C2—C3—C4—Cl1 | 178.47 (12) |
| O4—Cu1—N1—C12 | −132.15 (14) | C2—C3—C4—C5 | −0.4 (2) |
| Cu1—O1—C1—O2 | −6.0 (3) | C6—C5—C4—Cl1 | −178.34 (14) |
| Cu1—O1—C1—C2 | 174.59 (9) | C6—C5—C4—C3 | 0.6 (3) |
| Cu1—N1—C8—C9 | −175.86 (13) | C4—C5—C6—C7 | 0.1 (3) |
| C12—N1—C8—C9 | 0.3 (3) | C2—C7—C6—C5 | −0.9 (3) |
| Cu1—N1—C12—C11 | 175.38 (16) | C10—C9—C8—N1 | 0.2 (3) |
| C8—N1—C12—C11 | −0.6 (3) | C13—C9—C8—N1 | 175.42 (16) |
| C14—N2—C13—O3 | 179.6 (2) | C8—C9—C10—C11 | −0.5 (3) |
| C14—N2—C13—C9 | −0.3 (3) | C13—C9—C10—C11 | −175.56 (19) |
| C16—N2—C13—O3 | −2.8 (3) | C8—C9—C13—O3 | −79.9 (3) |
| C16—N2—C13—C9 | 177.28 (16) | C8—C9—C13—N2 | 100.0 (2) |
| C13—N2—C14—C15 | −102.9 (3) | C10—C9—C13—O3 | 95.1 (3) |
| C16—N2—C14—C15 | 79.5 (3) | C10—C9—C13—N2 | −85.0 (2) |
| C13—N2—C16—C17 | −88.5 (3) | C9—C10—C11—C12 | 0.2 (3) |
| C14—N2—C16—C17 | 89.2 (3) | N1—C12—C11—C10 | 0.4 (3) |
| O1—C1—C2—C3 | 167.34 (15) |
| H··· | ||||
| O4—H41···O2ii | 0.79 (4) | 1.95 (3) | 2.7367 (17) | 171 (4) |
Selected bond lengths (Å)
| Cu1—N1 | 2.0294 (12) |
| Cu1—O1 | 1.9337 (10) |
| Cu1—O4 | 2.238 (2) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O4—H41⋯O2i | 0.79 (4) | 1.95 (3) | 2.7367 (17) | 171 (4) |
Symmetry code: (i) .