Literature DB >> 14747987

Myosin flexibility: structural domains and collective vibrations.

Isabelle Navizet1, Richard Lavery, Robert L Jernigan.   

Abstract

The movement of the myosin motor along an actin filament involves a directed conformational change within the cross-bridge formed between the protein and the filament. Despite the structural data that has been obtained on this system, little is known of the mechanics of this conformational change. We have used existing crystallographic structures of three conformations of the myosin head, containing the motor domain and the lever arm, for structural comparisons and mechanical studies with a coarse-grained elastic network model. The results enable us to define structurally conserved domains within the protein and to better understand myosin flexibility. Notably they point to the role of the light chains in rigidifying the lever arm and to changes in flexibility as a consequence of nucleotide binding. Copyright 2003 Wiley-Liss, Inc.

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Year:  2004        PMID: 14747987     DOI: 10.1002/prot.10476

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  24 in total

1.  Probing protein mechanics: residue-level properties and their use in defining domains.

Authors:  Isabelle Navizet; Fabien Cailliez; Richard Lavery
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

2.  Models to Approximate the Motions of Protein Loops.

Authors:  Aris Skliros; Robert L Jernigan; Andrzej Kloczkowski
Journal:  J Chem Theory Comput       Date:  2010-10-12       Impact factor: 6.006

3.  Probing the local dynamics of nucleotide-binding pocket coupled to the global dynamics: myosin versus kinesin.

Authors:  Wenjun Zheng; Bernard R Brooks
Journal:  Biophys J       Date:  2005-05-06       Impact factor: 4.033

Review 4.  Coarse-grained normal mode analysis in structural biology.

Authors:  Ivet Bahar; A J Rader
Journal:  Curr Opin Struct Biol       Date:  2005-10       Impact factor: 6.809

5.  Investigating the local flexibility of functional residues in hemoproteins.

Authors:  Sophie Sacquin-Mora; Richard Lavery
Journal:  Biophys J       Date:  2006-01-20       Impact factor: 4.033

6.  Packing regularities in biological structures relate to their dynamics.

Authors:  Robert L Jernigan; Andrzej Kloczkowski
Journal:  Methods Mol Biol       Date:  2007

7.  Predicting the order in which contacts are broken during single molecule protein stretching experiments.

Authors:  Joanna I Sułkowska; Andrzej Kloczkowski; Taner Z Sen; Marek Cieplak; Robert L Jernigan
Journal:  Proteins       Date:  2008-04

8.  Violation of the fluctuation-dissipation theorem in a protein system.

Authors:  Kumiko Hayashi; Mitsunori Takano
Journal:  Biophys J       Date:  2007-05-11       Impact factor: 4.033

9.  The Extent of Cooperativity of Protein Motions Observed with Elastic Network Models Is Similar for Atomic and Coarser-Grained Models.

Authors:  Taner Z Sen; Yaping Feng; John V Garcia; Andrzej Kloczkowski; Robert L Jernigan
Journal:  J Chem Theory Comput       Date:  2006       Impact factor: 6.006

10.  Coupling between normal modes drives protein conformational dynamics: illustrations using allosteric transitions in myosin II.

Authors:  Wenjun Zheng; D Thirumalai
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

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