Literature DB >> 28894003

Reexamining the origin of the directionality of myosin V.

Raphael Alhadeff1, Arieh Warshel2.   

Abstract

The nature of the conversion of chemical energy to directional motion in myosin V is examined by careful simulations that include two complementary methods: direct Langevin Dynamics (LD) simulations with a scaled-down potential that provided a detailed time-resolved mechanism, and kinetic equations solution for the ensemble long-time propagation (based on information collected for segments of the landscape using LD simulations and experimental information). It is found that the directionality is due to the rate-limiting ADP release step rather than the potential energy of the lever arm angle. We show that the energy of the power stroke and the barriers involved in it are of minor consequence to the selectivity of forward over backward steps and instead suggest that the selective release of ADP from a postrigor myosin motor head promotes highly selective and processive myosin V. Our model is supported by different computational methods-LD simulations, Monte Carlo simulations, and kinetic equations solution-as well as by structure-based binding energy calculations.

Entities:  

Keywords:  energy transduction; molecular motor; power stroke

Mesh:

Substances:

Year:  2017        PMID: 28894003      PMCID: PMC5625930          DOI: 10.1073/pnas.1711214114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

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2.  A model of myosin V processivity.

Authors:  Steven S Rosenfeld; H Lee Sweeney
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3.  Video imaging of walking myosin V by high-speed atomic force microscopy.

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Journal:  Nature       Date:  2010-10-10       Impact factor: 49.962

4.  Three myosin V structures delineate essential features of chemo-mechanical transduction.

Authors:  Pierre-Damien Coureux; H Lee Sweeney; Anne Houdusse
Journal:  EMBO J       Date:  2004-10-28       Impact factor: 11.598

Review 5.  Electrostatic basis for enzyme catalysis.

Authors:  Arieh Warshel; Pankaz K Sharma; Mitsunori Kato; Yun Xiang; Hanbin Liu; Mats H M Olsson
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

Review 6.  Modeling electrostatic effects in proteins.

Authors:  Arieh Warshel; Pankaz K Sharma; Mitsunori Kato; William W Parson
Journal:  Biochim Biophys Acta       Date:  2006-08-25

7.  Electrostatic origin of the unidirectionality of walking myosin V motors.

Authors:  Shayantani Mukherjee; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-08       Impact factor: 11.205

Review 8.  Structural and functional insights into the Myosin motor mechanism.

Authors:  H Lee Sweeney; Anne Houdusse
Journal:  Annu Rev Biophys       Date:  2010       Impact factor: 12.981

9.  Design principles governing the motility of myosin V.

Authors:  Michael Hinczewski; Riina Tehver; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-07       Impact factor: 11.205

10.  Structural dynamics of myosin 5 during processive motion revealed by interferometric scattering microscopy.

Authors:  Joanna Andrecka; Jaime Ortega Arroyo; Yasuharu Takagi; Gabrielle de Wit; Adam Fineberg; Lachlan MacKinnon; Gavin Young; James R Sellers; Philipp Kukura
Journal:  Elife       Date:  2015-03-06       Impact factor: 8.140

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  5 in total

1.  A free-energy landscape for the glucagon-like peptide 1 receptor GLP1R.

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Journal:  Proteins       Date:  2019-08-02

2.  Revisiting the protomotive vectorial motion of F0-ATPase.

Authors:  Chen Bai; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-11       Impact factor: 11.205

3.  How kinesin waits for ATP affects the nucleotide and load dependence of the stepping kinetics.

Authors:  Ryota Takaki; Mauro L Mugnai; Yonathan Goldtzvik; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-28       Impact factor: 11.205

4.  Exploring the free-energy landscape of GPCR activation.

Authors:  Raphael Alhadeff; Igor Vorobyov; Han Wool Yoon; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-26       Impact factor: 11.205

5.  Demonstrating aspects of multiscale modeling by studying the permeation pathway of the human ZnT2 zinc transporter.

Authors:  Yarden Golan; Raphael Alhadeff; Fabian Glaser; Assaf Ganoth; Arieh Warshel; Yehuda G Assaraf
Journal:  PLoS Comput Biol       Date:  2018-11-02       Impact factor: 4.475

  5 in total

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