| Literature DB >> 24098667 |
Ying Zhu1, Yongguo Li, Shisheng Zhu, Renkuan Tang, Yunzhi Liu, Jianbo Li.
Abstract
BACKGROUND: The survivin polymorphisms have been shown to confer genetic susceptibility to various tumors, but the results are inconsistent. In order to accomplish a more precise estimation of the relationship, a meta-analysis was performed.Entities:
Mesh:
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Year: 2013 PMID: 24098667 PMCID: PMC3787000 DOI: 10.1371/journal.pone.0074778
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1The structure of survivin gene and the features of SNPs in survivin gene that analyzed in this meta-analysis.
Exons are shown by the black box and are numbered 1, 2, 3, and 4 from the 5′- to 3′-end of the gene; introns are shown by the thin line; the untranslated portions of the gene are shown by the white box; the SNPs in survivin gene are shown by the arrow and labeled A to E. The start and stop sites of transcript are shown by “+1” and “Stop”, respectively.
Figure 2Flow of study identification, inclusion, exclusion.
Main Characteristics of Included Studies.
| Author, year (country) | Ethnicity | Sample size (case/control) | Types of tumor | Matching criteria | control source | Genotype method | Polymorphism | HWE in controls | ||||
| rs8073069 | rs17878467 | rs9904341 | rs2071214 | rs1042489 | ||||||||
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| Caucasian | 81/180 | Cervical | _ | Population based | PCR-RFLP | rs9904341 | 0.856 | ||||
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| Asian | 582/582 | Lung | Age, gender | Hospital based | FLH | rs8073069 rs9904341 rs2071214 rs1042489 | 0.494 | 0.867 | 0.664 | 0.563 | |
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| Asian | 96/67 | Gastric | Age | Population based | RT-PCR | rs9904341 | 0.667 | ||||
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| Asian | 190/210 | Urothelial | Age, gender | Hospital based | PCR-RFLP | rs9904341 | 0.231 | ||||
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| Caucasian | 312/362 | Colorectal | _ | Hospital based | PCR-RFLP | rs9904341 | 0.110 | ||||
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| Asian | 220/220 | Gastric | Age, gender | Hospital based | PCR-RFLP | rs9904341 | 0.104 | ||||
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| Asian | 702/711 | Colorectal | Age, gender | Hospital based | PCR-RFLP | rs9904341 | 0.432 | ||||
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| Asian | 221/268 | Esophageal | Age, gender | Hospital based | PCR-RFLP | rs8073069 rs9904341 | 0.455 | 0.249 | |||
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| Asian | 235/346 | Bladder | _ | Hospital based | PCR-RFLP | rs9904341 rs2071214 | 0.228 | 0.167 | |||
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| Mixed | 47/57 | Gastric | _ | Hospital based | Quantitative PCR, Sequencing | rs9904341 | 0.784 | ||||
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| Caucasian | 80/160 | Pancreatic | Age, gender | Population based | PCR-RFLP | rs9904341 | 0.062 | ||||
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| Asian | 250/250 | Esophageal | Age, gender | Hospital based | PCR-RFLP | rs9904341 | 0.094 | ||||
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| Caucasian | 163/132 | Colorectal | _ | Population based | RT-PCR | rs9904341 | 0.184 | ||||
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| Asian | 855/1036 | Nasopharyngeal | Age, gender | Hospital based | TaqMan | rs9904341 | 0.357 | ||||
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| Caucasian | 160/241 | Hepatocellular | Age, gender, smoking and alcohol consumption | Hospital based | PCR-RFLP | rs9904341 | 0.109 | ||||
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| Caucasian | 121/142 | breast | _ | Population based | _ | rs2071214 | 0.631 | ||||
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| Asian | 31/30 | Endometrial | _ | Hospital based | PCR-RFLP | rs9904341 | 0.524 | ||||
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| Asian | 135/496 | Hepatocellular | Race, ethnicity | Hospital based | TaqMan | rs17878467 rs9904341 rs2071214 rs1042489 | 1.000 | 0.663 | 0.307 | 0.788 | |
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| Asian | 178/196 | Hepatocellular | Age, gender | Population based | PCR-RFLP | rs8073069 rs9904341 rs1042489 | 0.706 | 0.779 | 0.228 | ||
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| Asian | 710/760 | Renal | Age, gender | Hospital based | TaqMan | rs9904341 | 0.610 | ||||
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| Asian | 200/200 | Bladder | Age, gender | Hospital based | PCR-RFLP | rs17878467 rs9904341 | 0.120 | 0.471 | |||
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| Asian | 123/131 | Papillary thyroid | _ | Population based | PCR-RFLP | rs9904341 | 0.407 | ||||
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| Caucasian | 52/82 | Keratocystic odontogenic | Age, gender | Hospital based | PCR-RFLP | rs9904341 | 0.220 | ||||
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| Asian | 439/424 | Oral | Race | Hospital based | TaqMan | rs17878467 rs9904341 rs2071214 rs1042489 | 1.000 | 0.507 | 0.197 | 0.698 | |
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| Caucasian | 59/82 | Wilms | Ethnicity | Population based | PCR-RFLP | rs17878467 rs9904341 | 0.228 | 0.220 | |||
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| Asian | 138/138 | Ovarian | _ | Hospital based | PCR-LDR | rs9904341 | 0.505 | ||||
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| Caucasian | 88/480 | Gastric | Age, gender | Hospital based | PCR-RFLP | rs9904341 | 0.063 | ||||
PCR: polymerase chain reaction; RFLP: restriction fragment length polymorphism; FLH: fluorescence labeled hybridization; RT: reverse transcription; LDR: ligase detection reaction; HWE: Hardy-Weinberg equilibrium.
A p–value less than 0.05 of HWE was considered significant.
Meta-analysis results of survivin polymorphisms and tumor risk.
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| C vs. G OR (95% CI), P Ph, | C/C vs. G/G OR (95% CI), PPh, | G/C vs. G/G OR (95% CI), PPh, | Dominant genetic model OR (95% CI), PPh, | Recessive genetic model OR (95% CI), PPh, |
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| 1.12 (0.85–1.47), 0.433 0.028, 72.1; 0.670 | 1.46 (0.82–2.61), 0.195 0.053, 66.0; 0.613 | 0.96 (0.80–1.15), 0.652 0.235, 31.0; 0.755 | 1.05 (0.78–1.43), 0.731 0.080, 60.5; 0.657 |
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| 0.74 (0.38–1.46), 0.389 0.563, 0.0; 0.149 |
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| 0.86 (0.44–1.68), 0.663 0.578, 0.0; 0.207 |
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| 0.75 (0.43–1.30), 0.303 NA | 1.11 (0.26–4.75), 0.890 NA | 0.54 (0.26–1.10), 0.091 NA | 0.59 (0.30–1.18), 0.135 NA | 1.42(0.34–5.92), 0.632 NA |
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| 0.67 (0.31–1.43), 0.299 0.428, 0.0; 0.344 |
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| 0.75 (0.35–1.60), 0.460 0.495, 0.0; 0.380 |
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| 1.10 (0.96–1.27), 0.1800.001, 87.0; 0.380 |
| 1.08 (0.94–1.25), 0.2690.001, 62.8; 0.608 |
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| 1.01 (0.73–1.39), 0.9630.001, 84.9; 0.096 | 1.04 (0.60–1.82), 0.8790.001, 76.5; 0.061 | 0.95 (0.62–1.44), 0.7930.001, 79.2; 0.173 | 0.98 (0.63–1.53), 0.9280.001, 83.8; 0.117 | 1.09 (0.73–1.64), 0.6640.006, 64.8; 0.101 |
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| 1.15 (0.96–1.36), 0.1220.001, 89.0; 0.856 |
| 1.11 (0.97–1.28), 0.1280.009, 50.8; 0.130 |
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| 0.99 (0.56–1.73), 0.965 NA | 1.18 (0.38–3.67), 0.773 NA | 0.68 (0.29–1.58), 0.366 NA | 0.79 (0.36–1.74), 0.553 NA | 1.45 (0.51–4.11), 0.484 NA |
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| 1.51 (0.99–2.30), 0.056 0.002, 79.5; 0.637 |
| 1.26 (0.77–2.07), 0.3630.068, 57.9; 0.961 | 1.52 (0.85–2.73), 0.1590.011, 73.1; 0.782 |
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| 0.70 (0.49–1.00), 0.0500.943, 0.0; 0.526 | 0.86 (0.66–1.12), 0.2580.366, 0.6; 0.321 | 0.81 (0.63–1.04), 0.0990.528, 0.0; 0.237 | 0.75 (0.56–1.01), 0.0610.842, 0.0; 0.789 |
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| 1.08 (0.75–1.56), 0.6730.041, 75.9; NA | 1.32 (0.51–3.46), 0.5680.012, 84.2; NA | 0.99 (0.74–1.32), 0.9250.947, 0.0; NA | 1.06 (0.80–1.38), 0.6960.421, 0.0; NA | 1.32 (0.50–3.50), 0.5710.004, 87.9; NA |
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| 0.47 (0.06–3.43), 0.4540.001, 98.4; NA |
| 0.97 (0.72–1.31), 0.8530.245, 26.0; NA | 1.18 (0.89–1.57), 0.2480.332, 0.0; NA |
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| 1.15 (0.95–1.37), 0.1450.001, 82.6; 0.881 | 1.32 (0.94–1.85), 0.1040.001, 77.5; 0.810 | 1.07 (0.83–1.39), 0.5940.001, 76.0; 0.800 | 1.15 (0.87–1.51), 0.3300.001, 81.2; 0.921 |
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| 1.05 (0.84–1.31), 0.6830.042, 59.7; 0.575 |
| 0.97 (0.83–1.13), 0.652 0.105, 47.8; 0.408 | 0.99 (0.78–1.27), 0.963 0.060, 55.8; 0.481 |
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| 0.63 (0.23–1.73), 0.371 NA | 1.13 (0.07–18.26), 0.932 NA | 0.41 (0.13–1.32), 0.136 NA | 0.51 (0.17–1.52), 0.229 NA | 1.18 (0.07–19.12), 0.906 NA |
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| 1.07 (0.85–1.35), 0.553 0.031, 66.1; 0.878 |
| 0.98 (0.84–1.15), 0.820 0.135, 46.1; 0.931 | 1.03 (0.80–1.31), 0.835 0.058, 59.9; 0.867 |
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| 1.12 (0.88–1.42), 0.365 0.002, 79.1; 0.887 | 1.24 (0.76–2.03), 0.389 0.003, 78.3; 0.873 | 1.11 (0.91–1.35), 0.326 0.140, 45.2; 0.810 | 1.17 (0.82–1.67), 0.385 0.024, 68.3; 0.996 | 1.15 (0.84–1.57), 0.381 0.016, 70.8; 0.752 |
OR: odds ratio; CI: confidence interval; Ph: the P-value of heterogeneity; PE: the P-value of Egger's test; NA: not applicable. When Ph is <0.1 and I exceeds 50%, the random-effects model is used. Conversely, the fixed-effects model is used.
Figure 3Forest plot of tumor risk associated with the survivin rs9904341 under the allele contrast.
Figure 4Forest plots of the association of other survivin SNPs with tumor risk under the allele contrast.
A: rs2071214, B: rs17878467, C: rs8073069, D: rs1042489.
Figure 5Begg's funnel plot of the survivin rs9904341 and tumor risk in different contrast models.
A: C vs. G, B: C/C vs. G/G, C: G/C vs. G/G, D: dominant genetic model (C/C+G/C vs. G/G), and E: recessive genetic model (C/C vs. G/C+G/G).