Literature DB >> 24098236

Methyl 2-((2Z,5Z)-2-{(E)-2-[1-(4-hy-droxy-phen-yl)ethyl-idene]hydrazin-1-yl-idene}-4-oxo-3-phenyl-1,3-thia-zolidin-5-yl-idene)acetate.

Shaaban K Mohamed1, Joel T Mague, Mehmet Akkurt, Alaa A Hassan, Mustafa R Albayati.   

Abstract

In the title compound, C20H17N3O4S, all non-H atoms, except those of the phenyl ring, are approximately coplanar [maximum deviation = 0.2214 (1) Å], and the dihedral angle between their best plane and the benzene ring is 53.13 (1)°. A short intra-molecular O⋯S contact of 2.838 (1) Å is formed between the ester carbonyl O atom and the S atom of the thia-zolidine ring. In the crystal, mol-ecules associated via O-H⋯O, C-H⋯O and C-H⋯S hydrogen bonds form layers parallel to (010), with only C-H⋯O-type short contacts between the mol-ecules in adjacent layers.

Entities:  

Year:  2013        PMID: 24098236      PMCID: PMC3790417          DOI: 10.1107/S1600536813025270

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of 4-thia­zolidinones, see: Dayam et al. (2006 ▶); Srivastava et al. (2005 ▶), Look et al. (1996 ▶), Barreca et al. (2001 ▶); Diurno et al. (1992 ▶).

Experimental

Crystal data

C20H17N3O4S M = 395.42 Monoclinic, a = 9.5049 (9) Å b = 20.656 (2) Å c = 10.1364 (10) Å β = 107.637 (1)° V = 1896.6 (3) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 150 K 0.19 × 0.11 × 0.05 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2013 ▶) T min = 0.82, T max = 0.99 16907 measured reflections 4582 independent reflections 3740 reflections with i > 2σ(i) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.118 S = 1.06 4582 reflections 259 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.44 e Å−3 Data collection: APEX2 (Bruker, 2013 ▶); cell refinement: SAINT (Bruker, 2013 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXT (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813025270/gk2589sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813025270/gk2589Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813025270/gk2589Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H17N3O4SF(000) = 824
Mr = 395.42Dx = 1.385 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 8755 reflections
a = 9.5049 (9) Åθ = 2.3–28.6°
b = 20.656 (2) ŵ = 0.20 mm1
c = 10.1364 (10) ÅT = 150 K
β = 107.637 (1)°Plate, clear yellow
V = 1896.6 (3) Å30.19 × 0.11 × 0.05 mm
Z = 4
Bruker SMART APEX CCD diffractometer4582 independent reflections
Radiation source: fine-focus sealed tube3740 reflections with i > 2σ(i)
Graphite monochromatorRint = 0.039
Detector resolution: 8.3660 pixels mm-1θmax = 28.7°, θmin = 2.0°
φ and ω scansh = −12→12
Absorption correction: multi-scan (SADABS; Bruker, 2013)k = −27→27
Tmin = 0.82, Tmax = 0.99l = −13→13
16907 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.118 W = 1/[Σ2(FO2) + (0.0643P)2 + 0.3949P] WHERE P = (FO2 + 2FC2)/3
S = 1.06(Δ/σ)max = 0.001
4582 reflectionsΔρmax = 0.34 e Å3
259 parametersΔρmin = −0.44 e Å3
0 restraints
Experimental. The diffraction data were collected in three sets of 606 frames (0.3° width in ω) at φ = 0, 120 and 240°. A scan time of 40 sec/frame was used.
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S11.01222 (4)0.18869 (2)0.39033 (4)0.0203 (1)
O11.40358 (11)0.26023 (5)0.52637 (11)0.0240 (3)
O21.09079 (13)0.05575 (6)0.42140 (13)0.0347 (4)
O31.32263 (14)0.02111 (6)0.52834 (14)0.0378 (4)
O40.14035 (12)0.15348 (6)0.10230 (13)0.0285 (3)
N11.16412 (13)0.29748 (6)0.43935 (12)0.0189 (3)
N20.90771 (13)0.31123 (6)0.34670 (13)0.0222 (4)
N30.77907 (13)0.27335 (6)0.30473 (13)0.0219 (4)
C11.27118 (16)0.25046 (7)0.47990 (15)0.0190 (4)
C21.20296 (16)0.18459 (7)0.45802 (14)0.0193 (4)
C31.01955 (15)0.27395 (7)0.38850 (14)0.0190 (4)
C41.28646 (17)0.13149 (7)0.49043 (16)0.0229 (4)
C51.22088 (18)0.06672 (8)0.47422 (16)0.0260 (5)
C61.2661 (3)−0.04389 (9)0.5273 (3)0.0553 (8)
C71.20015 (15)0.36539 (7)0.44261 (16)0.0206 (4)
C81.29110 (17)0.39165 (8)0.56415 (17)0.0275 (5)
C91.3342 (2)0.45594 (9)0.5655 (2)0.0368 (5)
C101.2839 (2)0.49351 (8)0.4477 (2)0.0384 (6)
C111.1899 (2)0.46687 (8)0.32791 (19)0.0347 (5)
C121.14814 (18)0.40248 (8)0.32417 (16)0.0272 (5)
C130.65717 (16)0.30559 (7)0.27572 (15)0.0196 (4)
C140.64599 (17)0.37782 (8)0.28058 (17)0.0260 (5)
C150.52047 (15)0.26621 (7)0.23315 (15)0.0187 (4)
C160.52602 (16)0.19872 (7)0.23265 (17)0.0241 (4)
C170.39928 (17)0.16202 (8)0.18891 (18)0.0267 (5)
C180.26171 (16)0.19204 (7)0.14442 (15)0.0207 (4)
C190.25339 (16)0.25898 (7)0.14520 (16)0.0227 (4)
C200.38175 (16)0.29540 (7)0.18934 (16)0.0221 (4)
H41.390700.135800.524800.0270*
H4O0.066 (2)0.1774 (11)0.077 (2)0.046 (6)*
H6A1.19470−0.044900.579600.0830*
H6B1.34780−0.073500.569900.0830*
H6C1.21740−0.057300.431500.0830*
H81.323600.366000.645600.0330*
H91.398600.474200.647700.0440*
H101.313700.537500.449000.0460*
H111.153800.493000.247600.0420*
H121.084800.384100.241600.0330*
H14A0.745300.396600.311000.0390*
H14B0.592500.389900.345700.0390*
H14C0.592800.394200.188200.0390*
H160.619100.177600.263100.0290*
H170.405700.116100.189100.0320*
H190.160000.279900.115600.0270*
H200.375000.341300.189700.0260*
U11U22U33U12U13U23
S10.0149 (2)0.0209 (2)0.0233 (2)−0.0034 (1)0.0030 (1)−0.0019 (1)
O10.0134 (5)0.0242 (6)0.0308 (6)−0.0009 (4)0.0011 (4)0.0019 (4)
O20.0316 (7)0.0275 (6)0.0427 (7)−0.0071 (5)0.0078 (5)−0.0030 (5)
O30.0387 (7)0.0198 (6)0.0525 (8)0.0051 (5)0.0104 (6)0.0035 (5)
O40.0159 (5)0.0239 (6)0.0441 (7)−0.0016 (5)0.0067 (5)−0.0074 (5)
N10.0131 (6)0.0191 (6)0.0222 (6)−0.0025 (5)0.0017 (5)−0.0002 (5)
N20.0141 (6)0.0247 (7)0.0252 (7)−0.0007 (5)0.0022 (5)−0.0009 (5)
N30.0137 (6)0.0252 (7)0.0250 (7)−0.0005 (5)0.0030 (5)0.0008 (5)
C10.0158 (7)0.0215 (7)0.0187 (7)−0.0012 (5)0.0036 (5)0.0005 (5)
C20.0180 (7)0.0220 (7)0.0172 (7)−0.0034 (6)0.0043 (5)−0.0011 (5)
C30.0147 (7)0.0220 (7)0.0186 (7)−0.0026 (5)0.0025 (5)−0.0012 (5)
C40.0193 (7)0.0236 (8)0.0242 (7)0.0000 (6)0.0044 (6)−0.0009 (6)
C50.0294 (8)0.0222 (8)0.0273 (8)0.0005 (6)0.0101 (7)−0.0014 (6)
C60.0658 (15)0.0195 (9)0.0817 (17)0.0013 (9)0.0238 (13)0.0051 (10)
C70.0153 (6)0.0181 (7)0.0273 (8)−0.0001 (5)0.0050 (6)−0.0002 (6)
C80.0230 (8)0.0242 (8)0.0296 (8)0.0001 (6)−0.0005 (6)0.0014 (6)
C90.0334 (9)0.0251 (9)0.0423 (10)−0.0044 (7)−0.0031 (8)−0.0061 (7)
C100.0401 (10)0.0182 (8)0.0524 (12)−0.0038 (7)0.0071 (9)0.0001 (7)
C110.0408 (10)0.0246 (8)0.0354 (9)0.0018 (7)0.0066 (8)0.0074 (7)
C120.0283 (8)0.0242 (8)0.0251 (8)−0.0008 (6)0.0023 (6)−0.0004 (6)
C130.0157 (7)0.0239 (8)0.0185 (7)0.0017 (6)0.0041 (5)0.0016 (5)
C140.0198 (7)0.0224 (8)0.0344 (9)0.0006 (6)0.0060 (6)−0.0006 (6)
C150.0143 (7)0.0228 (7)0.0190 (7)0.0009 (5)0.0051 (5)0.0017 (5)
C160.0151 (7)0.0232 (8)0.0334 (8)0.0042 (6)0.0065 (6)0.0029 (6)
C170.0206 (8)0.0191 (7)0.0409 (9)0.0027 (6)0.0099 (7)−0.0003 (6)
C180.0162 (7)0.0234 (8)0.0230 (7)−0.0013 (6)0.0069 (6)−0.0028 (6)
C190.0147 (7)0.0249 (8)0.0270 (8)0.0044 (6)0.0041 (6)0.0003 (6)
C200.0171 (7)0.0195 (7)0.0289 (8)0.0032 (6)0.0059 (6)0.0015 (6)
S1—C21.7352 (16)C13—C151.482 (2)
S1—C31.7628 (15)C15—C201.394 (2)
O1—C11.2195 (19)C15—C161.395 (2)
O2—C51.211 (2)C16—C171.378 (2)
O3—C51.343 (2)C17—C181.393 (2)
O3—C61.445 (2)C18—C191.385 (2)
O4—C181.360 (2)C19—C201.387 (2)
O4—H4O0.84 (2)C4—H40.9500
N1—C11.376 (2)C6—H6A0.9800
N1—C71.4420 (19)C6—H6B0.9800
N1—C31.4003 (19)C6—H6C0.9800
N2—N31.4046 (18)C8—H80.9500
N2—C31.2766 (19)C9—H90.9500
N3—C131.291 (2)C10—H100.9500
C1—C21.495 (2)C11—H110.9500
C2—C41.335 (2)C12—H120.9500
C4—C51.464 (2)C14—H14A0.9800
C7—C121.383 (2)C14—H14B0.9800
C7—C81.384 (2)C14—H14C0.9800
C8—C91.389 (3)C16—H160.9500
C9—C101.382 (3)C17—H170.9500
C10—C111.385 (3)C19—H190.9500
C11—C121.385 (2)C20—H200.9500
C13—C141.498 (2)
C2—S1—C390.75 (7)O4—C18—C17117.69 (13)
C5—O3—C6115.39 (17)O4—C18—C19122.83 (14)
C18—O4—H4O107.9 (15)C17—C18—C19119.48 (14)
C1—N1—C3114.79 (12)C18—C19—C20119.81 (14)
C3—N1—C7123.08 (12)C15—C20—C19121.51 (13)
C1—N1—C7122.05 (13)C2—C4—H4119.00
N3—N2—C3108.99 (12)C5—C4—H4119.00
N2—N3—C13114.87 (12)O3—C6—H6A109.00
O1—C1—C2123.95 (14)O3—C6—H6B109.00
N1—C1—C2110.48 (13)O3—C6—H6C109.00
O1—C1—N1125.57 (14)H6A—C6—H6B110.00
S1—C2—C4127.54 (12)H6A—C6—H6C109.00
C1—C2—C4120.83 (14)H6B—C6—H6C109.00
S1—C2—C1111.63 (11)C7—C8—H8120.00
S1—C3—N2125.07 (12)C9—C8—H8120.00
N1—C3—N2122.57 (13)C8—C9—H9120.00
S1—C3—N1112.36 (10)C10—C9—H9120.00
C2—C4—C5121.46 (15)C9—C10—H10120.00
O2—C5—O3124.20 (16)C11—C10—H10120.00
O2—C5—C4124.31 (15)C10—C11—H11120.00
O3—C5—C4111.46 (14)C12—C11—H11120.00
N1—C7—C12119.94 (14)C7—C12—H12121.00
C8—C7—C12121.22 (14)C11—C12—H12121.00
N1—C7—C8118.80 (13)C13—C14—H14A109.00
C7—C8—C9119.12 (15)C13—C14—H14B109.00
C8—C9—C10120.31 (17)C13—C14—H14C109.00
C9—C10—C11119.78 (16)H14A—C14—H14B110.00
C10—C11—C12120.59 (16)H14A—C14—H14C109.00
C7—C12—C11118.95 (15)H14B—C14—H14C109.00
N3—C13—C15115.50 (13)C15—C16—H16119.00
C14—C13—C15119.45 (13)C17—C16—H16119.00
N3—C13—C14125.05 (14)C16—C17—H17120.00
C13—C15—C20121.09 (13)C18—C17—H17120.00
C16—C15—C20117.65 (14)C18—C19—H19120.00
C13—C15—C16121.25 (14)C20—C19—H19120.00
C15—C16—C17121.37 (15)C15—C20—H20119.00
C16—C17—C18120.18 (15)C19—C20—H20119.00
C3—S1—C2—C10.49 (11)S1—C2—C4—C5−1.6 (2)
C3—S1—C2—C4179.93 (14)C1—C2—C4—C5177.79 (14)
C2—S1—C3—N1−0.41 (11)C2—C4—C5—O26.1 (3)
C2—S1—C3—N2179.83 (13)C2—C4—C5—O3−172.43 (14)
C6—O3—C5—O2−3.4 (3)N1—C7—C8—C9175.77 (15)
C6—O3—C5—C4175.15 (17)C12—C7—C8—C9−2.0 (3)
C3—N1—C1—O1179.63 (14)N1—C7—C12—C11−176.95 (15)
C3—N1—C1—C20.14 (17)C8—C7—C12—C110.8 (3)
C7—N1—C1—O12.8 (2)C7—C8—C9—C101.5 (3)
C7—N1—C1—C2−176.72 (12)C8—C9—C10—C110.1 (3)
C1—N1—C3—S10.22 (15)C9—C10—C11—C12−1.3 (3)
C1—N1—C3—N2179.98 (14)C10—C11—C12—C70.9 (3)
C7—N1—C3—S1177.05 (11)N3—C13—C15—C163.4 (2)
C7—N1—C3—N2−3.2 (2)N3—C13—C15—C20−175.24 (14)
C1—N1—C7—C8−52.6 (2)C14—C13—C15—C16−177.37 (14)
C1—N1—C7—C12125.14 (16)C14—C13—C15—C204.0 (2)
C3—N1—C7—C8130.78 (15)C13—C15—C16—C17−177.90 (15)
C3—N1—C7—C12−51.5 (2)C20—C15—C16—C170.8 (2)
C3—N2—N3—C13172.11 (13)C13—C15—C20—C19177.96 (14)
N3—N2—C3—S10.83 (17)C16—C15—C20—C19−0.7 (2)
N3—N2—C3—N1−178.90 (12)C15—C16—C17—C18−0.3 (3)
N2—N3—C13—C141.6 (2)C16—C17—C18—O4179.96 (15)
N2—N3—C13—C15−179.18 (12)C16—C17—C18—C19−0.3 (2)
O1—C1—C2—S1−179.96 (13)O4—C18—C19—C20−179.92 (14)
O1—C1—C2—C40.6 (2)C17—C18—C19—C200.4 (2)
N1—C1—C2—S1−0.45 (15)C18—C19—C20—C150.1 (2)
N1—C1—C2—C4−179.95 (15)
D—H···AD—HH···AD···AD—H···A
O4—H4O···O1i0.84 (2)1.96 (2)2.7901 (16)174.8 (19)
C8—H8···S1ii0.952.823.7272 (17)160
C10—H10···O4iii0.952.523.452 (2)167
C14—H14A···N20.982.302.742 (2)106
C19—H19···O1i0.952.473.200 (2)133
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O4—H4O⋯O1i 0.84 (2)1.96 (2)2.7901 (16)174.8 (19)
C8—H8⋯S1ii 0.952.823.7272 (17)160
C10—H10⋯O4iii 0.952.523.452 (2)167
C19—H19⋯O1i 0.952.473.200 (2)133

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Discovery of small molecule integrin alphavbeta3 antagonists as novel anticancer agents.

Authors:  Raveendra Dayam; Francesca Aiello; Jinxia Deng; Yun Wu; Antonio Garofalo; Xiaoyuan Chen; Nouri Neamati
Journal:  J Med Chem       Date:  2006-07-27       Impact factor: 7.446

3.  Discovery of 2,3-diaryl-1,3-thiazolidin-4-ones as potent anti-HIV-1 agents.

Authors:  M L Barreca; A Chimirri; L De Luca; A M Monforte; P Monforte; A Rao; M Zappalà; J Balzarini; E De Clercq; C Pannecouque; M Witvrouw
Journal:  Bioorg Med Chem Lett       Date:  2001-07-09       Impact factor: 2.823

4.  Synthesis and antihistaminic activity of some thiazolidin-4-ones.

Authors:  M V Diurno; O Mazzoni; E Piscopo; A Calignano; F Giordano; A Bolognese
Journal:  J Med Chem       Date:  1992-07-24       Impact factor: 7.446

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  2 in total

1.  Methyl (2Z)-2-{(2Z)-3-[(cyclo-pentyl-idene)amino]-4-oxo-2-phenyl-imino-1,3-thia-zol-idin-5-yl-idene}acetate.

Authors:  Joel T Mague; Mehmet Akkurt; Shaaban K Mohamed; Alaa A Hassan; Mustafa R Albayati
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-02-26

2.  Crystal structure of methyl (Z)-2-[(Z)-3-methyl-2-({(E)-1-[(R*)-4-methyl-cyclo-hex-3-en-1-yl]ethyl-idene}hydrazinyl-idene)-4-oxo-thia-zolidin-5-yl-idene]acetate.

Authors:  Mourad Fawzi; Aziz Auhmani; Moulay Youssef Ait Itto; Abdelkhalek Riahi; Sylviane Chevreux; El Mostafa Ketatni
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-10-13
  2 in total

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