Literature DB >> 24097411

Sex-specific effects of cis-regulatory variants in Drosophila melanogaster.

Joseph D Coolon1, William Webb, Patricia J Wittkopp.   

Abstract

Sexual dimorphism at the level of gene expression is common and well documented, but much less is known about how different cis-regulatory alleles interact with the different trans-regulatory environments present in males and females. Here we show that sex-specific effects of cis-regulatory variants are common in Drosophila.

Entities:  

Keywords:  allele-specific expression; epistasis; gene regulation; imprinting; trans-regulation

Mesh：

Substances：

Year:  2013        PMID： 24097411      PMCID： PMC3832283          DOI： 10.1534/genetics.113.156331

Source DB:  PubMed          Journal:  Genetics        ISSN： 0016-6731            Impact factor:   4.562


  21 in total

1.  Single-nucleotide polymorphism analysis by pyrosequencing.

Authors:  A Ahmadian; B Gharizadeh; A C Gustafsson; F Sterky; P Nyrén; M Uhlén; J Lundeberg
Journal:  Anal Biochem       Date:  2000-04-10       Impact factor: 3.365

2.  Detection of regulatory variation in mouse genes.

Authors:  Christopher R Cowles; Joel N Hirschhorn; David Altshuler; Eric S Lander
Journal:  Nat Genet       Date:  2002-10-15       Impact factor: 38.330

Review 3.  The evolution of transcriptional regulation in eukaryotes.

Authors:  Gregory A Wray; Matthew W Hahn; Ehab Abouheif; James P Balhoff; Margaret Pizer; Matthew V Rockman; Laura A Romano
Journal:  Mol Biol Evol       Date:  2003-05-30       Impact factor: 16.240

4.  Parent-of-origin effects on mRNA expression in Drosophila melanogaster not caused by genomic imprinting.

Authors:  Patricia J Wittkopp; Belinda K Haerum; Andrew G Clark
Journal:  Genetics       Date:  2006-05-15       Impact factor: 4.562

5.  Sebida: a database for the functional and evolutionary analysis of genes with sex-biased expression.

Authors:  Florian Gnad; John Parsch
Journal:  Bioinformatics       Date:  2006-07-31       Impact factor: 6.937

6.  The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster.

Authors:  W Jin; R M Riley; R D Wolfinger; K P White; G Passador-Gurgel; G Gibson
Journal:  Nat Genet       Date:  2001-12       Impact factor: 38.330

7.  Sexual isolation in Drosophila melanogaster: a possible case of incipient speciation.

Authors:  C I Wu; H Hollocher; D J Begun; C F Aquadro; Y Xu; M L Wu
Journal:  Proc Natl Acad Sci U S A       Date:  1995-03-28       Impact factor: 11.205

8.  Hybrid lethal systems in the Drosophila melanogaster species complex. II. The Zygotic hybrid rescue (Zhr) gene of D. melanogaster.

Authors:  K Sawamura; M T Yamamoto; T K Watanabe
Journal:  Genetics       Date:  1993-02       Impact factor: 4.562

9.  Evolutionary changes in cis and trans gene regulation.

Authors:  Patricia J Wittkopp; Belinda K Haerum; Andrew G Clark
Journal:  Nature       Date:  2004-07-01       Impact factor: 49.962

10.  African and North American populations of Drosophila melanogaster are very different at the DNA level.

Authors:  D J Begun; C F Aquadro
Journal:  Nature       Date:  1993-10-07       Impact factor: 49.962
View more
  9 in total

1.  Molecular Mechanisms and Evolutionary Processes Contributing to Accelerated Divergence of Gene Expression on the Drosophila X Chromosome.

Authors:  Joseph D Coolon; Kraig R Stevenson; C Joel McManus; Bing Yang; Brenton R Graveley; Patricia J Wittkopp
Journal:  Mol Biol Evol       Date:  2015-06-02       Impact factor: 16.240

2.  Genetic basis of octanoic acid resistance in Drosophila sechellia: functional analysis of a fine-mapped region.

Authors:  J M Andrade López; S M Lanno; J M Auerbach; E C Moskowitz; L A Sligar; P J Wittkopp; J D Coolon
Journal:  Mol Ecol       Date:  2017-02-04       Impact factor: 6.185

3.  Tempo and mode of regulatory evolution in Drosophila.

Authors:  Joseph D Coolon; C Joel McManus; Kraig R Stevenson; Brenton R Graveley; Patricia J Wittkopp
Journal:  Genome Res       Date:  2014-02-24       Impact factor: 9.043

4.  Sex-specific trans-regulatory variation on the Drosophila melanogaster X chromosome.

Authors:  Michael Stocks; Rebecca Dean; Björn Rogell; Urban Friberg
Journal:  PLoS Genet       Date:  2015-02-13       Impact factor: 5.917

5.  Dominance and Sexual Dimorphism Pervade the Salix purpurea L. Transcriptome.

Authors:  Craig H Carlson; Yongwook Choi; Agnes P Chan; Michelle J Serapiglia; Christopher D Town; Lawrence B Smart
Journal:  Genome Biol Evol       Date:  2017-09-01       Impact factor: 3.416

6.  Support for the Dominance Theory in Drosophila Transcriptomes.

Authors:  Ana Llopart; Evgeny Brud; Nikale Pettie; Josep M Comeron
Journal:  Genetics       Date:  2018-08-21       Impact factor: 4.562

7.  Investigating the role of Osiris genes in Drosophila sechellia larval resistance to a host plant toxin.

Authors:  Stephen M Lanno; Serena J Shimshak; Rubye D Peyser; Samuel C Linde; Joseph D Coolon
Journal:  Ecol Evol       Date:  2019-01-15       Impact factor: 2.912

8.  Genomics analysis of Drosophila sechellia response to Morinda citrifolia fruit diet.

Authors:  Zachary Drum; Stephen Lanno; Sara M Gregory; Serena Shimshak; Will Barr; Austin Gatesman; Mark Schadt; Jack Sanford; Aaron Arkin; Brynn Assignon; Sofia Colorado; Carol Dalgarno; Trevor Devanny; Tara Ghandour; Rose Griffin; Mia Hogan; Erica Horowitz; Emily McGhie; Jake Multer; Hannah O'Halloran; Kofi Ofori-Darko; Dmitry Pokushalov; Nick Richards; Kathleen Sagarin; Nicholas Taylor; Acadia Thielking; Phie Towle; Joseph Coolon
Journal:  G3 (Bethesda)       Date:  2022-09-30       Impact factor: 3.542

9.  Transcriptomic Analysis of Octanoic Acid Response in Drosophila sechellia Using RNA-Sequencing.

Authors:  Stephen M Lanno; Sara M Gregory; Serena J Shimshak; Maximilian K Alverson; Kenneth Chiu; Arden L Feil; Morgan G Findley; Taylor E Forman; Julia T Gordon; Josephine Ho; Joanna L Krupp; Ivy Lam; Josh Lane; Samuel C Linde; Ashley E Morse; Serena Rusk; Robie Ryan; Avva Saniee; Ruchi B Sheth; Jennifer J Siranosian; Lalitpatr Sirichantaropart; Sonya R Sternlieb; Christina M Zaccardi; Joseph D Coolon
Journal:  G3 (Bethesda)       Date:  2017-12-04       Impact factor: 3.154
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.