Literature DB >> 16702434

Parent-of-origin effects on mRNA expression in Drosophila melanogaster not caused by genomic imprinting.

Patricia J Wittkopp1, Belinda K Haerum, Andrew G Clark.   

Abstract

Parent-of-origin effects create differences in gene expression among genetically identical individuals. Using measurements of allele-specific expression, we demonstrate that previously reported parent-of-origin effects on standing mRNA levels in Drosophila melanogaster are not attributable to genomic imprinting. Offspring from reciprocal crosses exhibit differences in total expression without differences in allelic expression, indicating that other types of maternal and/or paternal effects alter expression.

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Year:  2006        PMID: 16702434      PMCID: PMC1526670          DOI: 10.1534/genetics.105.054684

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  28 in total

1.  Adult abnormalities resulting from a localized blastoderm defect in a maternal-effect mutant of Drosophila.

Authors:  T B Rice; F A Rice; A Garen
Journal:  Dev Biol       Date:  1979-03       Impact factor: 3.582

2.  Detection of regulatory variation in mouse genes.

Authors:  Christopher R Cowles; Joel N Hirschhorn; David Altshuler; Eric S Lander
Journal:  Nat Genet       Date:  2002-10-15       Impact factor: 38.330

Review 3.  Genomic imprinting.

Authors:  Simao Teixeira da Rocha; Anne C Ferguson-Smith
Journal:  Curr Biol       Date:  2004-08-24       Impact factor: 10.834

4.  Extensive sex-specific nonadditivity of gene expression in Drosophila melanogaster.

Authors:  Greg Gibson; Rebecca Riley-Berger; Larry Harshman; Artyom Kopp; Scott Vacha; Sergey Nuzhdin; Marta Wayne
Journal:  Genetics       Date:  2004-08       Impact factor: 4.562

Review 5.  Imprinting and seed development.

Authors:  Mary Gehring; Yeonhee Choi; Robert L Fischer
Journal:  Plant Cell       Date:  2004-03-09       Impact factor: 11.277

Review 6.  Determination of the embryonic axes of Drosophila.

Authors:  C Nüsslein-Volhard
Journal:  Dev Suppl       Date:  1991

7.  Zygotic lethals with specific maternal effect phenotypes in Drosophila melanogaster. I. Loci on the X chromosome.

Authors:  N Perrimon; L Engstrom; A P Mahowald
Journal:  Genetics       Date:  1989-02       Impact factor: 4.562

8.  Genomic imprinting in Drosophila is maintained by the products of Suppressor of variegation and trithorax group, but not Polycomb group, genes.

Authors:  V Joanis; V K Lloyd
Journal:  Mol Genet Genomics       Date:  2002-08-07       Impact factor: 3.291

9.  Complex genetic architecture of population differences in adult lifespan of a beetle: nonadditive inheritance, gender differences, body size and a large maternal effect.

Authors:  C W Fox; M E Czesak; W G Wallin
Journal:  J Evol Biol       Date:  2004-09       Impact factor: 2.411

10.  Evolutionary changes in cis and trans gene regulation.

Authors:  Patricia J Wittkopp; Belinda K Haerum; Andrew G Clark
Journal:  Nature       Date:  2004-07-01       Impact factor: 49.962

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  21 in total

1.  Key considerations for measuring allelic expression on a genomic scale using high-throughput sequencing.

Authors:  Pierre Fontanillas; Christian R Landry; Patricia J Wittkopp; Carsten Russ; Jonathan D Gruber; Chad Nusbaum; Daniel L Hartl
Journal:  Mol Ecol       Date:  2010-03       Impact factor: 6.185

2.  Allelic imbalance in Drosophila hybrid heads: exons, isoforms, and evolution.

Authors:  R M Graze; L L Novelo; V Amin; J M Fear; G Casella; S V Nuzhdin; L M McIntyre
Journal:  Mol Biol Evol       Date:  2012-01-07       Impact factor: 16.240

3.  Independent effects of cis- and trans-regulatory variation on gene expression in Drosophila melanogaster.

Authors:  Patricia J Wittkopp; Belinda K Haerum; Andrew G Clark
Journal:  Genetics       Date:  2008-02-03       Impact factor: 4.562

4.  Parent-of-origin effects on voluntary exercise levels and body composition in mice.

Authors:  Scott A Kelly; Derrick L Nehrenberg; Kunjie Hua; Ryan R Gordon; Theodore Garland; Daniel Pomp
Journal:  Physiol Genomics       Date:  2009-11-10       Impact factor: 3.107

5.  The influence of parental effects on transcriptomic landscape during early development in brook charr (Salvelinus fontinalis, Mitchill).

Authors:  B Bougas; C Audet; L Bernatchez
Journal:  Heredity (Edinb)       Date:  2013-01-09       Impact factor: 3.821

6.  Buffering of Genetic Regulatory Networks in Drosophila melanogaster.

Authors:  Justin M Fear; Luis G León-Novelo; Alison M Morse; Alison R Gerken; Kjong Van Lehmann; John Tower; Sergey V Nuzhdin; Lauren M McIntyre
Journal:  Genetics       Date:  2016-05-18       Impact factor: 4.562

7.  Sex-specific effects of cis-regulatory variants in Drosophila melanogaster.

Authors:  Joseph D Coolon; William Webb; Patricia J Wittkopp
Journal:  Genetics       Date:  2013-10-04       Impact factor: 4.562

8.  Genomic imprinting absent in Drosophila melanogaster adult females.

Authors:  Joseph D Coolon; Kraig R Stevenson; C Joel McManus; Brenton R Graveley; Patricia J Wittkopp
Journal:  Cell Rep       Date:  2012-07-20       Impact factor: 9.423

9.  Endogenously imprinted genes in Drosophila melanogaster.

Authors:  Lori A McEachern; Nicholas J Bartlett; Vett K Lloyd
Journal:  Mol Genet Genomics       Date:  2014-08       Impact factor: 3.291

10.  Allele-specific expression assays using Solexa.

Authors:  Bradley J Main; Ryan D Bickel; Lauren M McIntyre; Rita M Graze; Peter P Calabrese; Sergey V Nuzhdin
Journal:  BMC Genomics       Date:  2009-09-09       Impact factor: 3.969

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