Literature DB >> 24062454

On reversible H2 loss upon N2 binding to FeMo-cofactor of nitrogenase.

Zhi-Yong Yang1, Nimesh Khadka, Dmitriy Lukoyanov, Brian M Hoffman, Dennis R Dean, Lance C Seefeldt.   

Abstract

Nitrogenase is activated for N2 reduction by the accumulation of four electrons/protons on its active site FeMo-cofactor, yielding a state, designated as E4, which contains two iron-bridging hydrides [Fe-H-Fe]. A central puzzle of nitrogenase function is an apparently obligatory formation of one H2 per N2 reduced, which would "waste" two reducing equivalents and four ATP. We recently presented a draft mechanism for nitrogenase that provides an explanation for obligatory H2 production. In this model, H2 is produced by reductive elimination of the two bridging hydrides of E4 during N2 binding. This process releases H2, yielding N2 bound to FeMo-cofactor that is doubly reduced relative to the resting redox level, and thereby is activated to promptly generate bound diazene (HN=NH). This mechanism predicts that during turnover under D2/N2, the reverse reaction of D2 with the N2-bound product of reductive elimination would generate dideutero-E4 [E4(2D)], which can relax with loss of HD to the state designated E2, with a single deuteride bridge [E2(D)]. Neither of these deuterated intermediate states could otherwise form in H2O buffer. The predicted E2(D) and E4(2D) states are here established by intercepting them with the nonphysiological substrate acetylene (C2H2) to generate deuterated ethylenes (C2H3D and C2H2D2). The demonstration that gaseous H2/D2 can reduce a substrate other than H(+) with N2 as a cocatalyst confirms the essential mechanistic role for H2 formation, and hence a limiting stoichiometry for biological nitrogen fixation of eight electrons/protons, and provides direct experimental support for the reductive elimination mechanism.

Entities:  

Keywords:  acetylene reduction; metalloenzyme

Mesh:

Substances:

Year:  2013        PMID: 24062454      PMCID: PMC3799348          DOI: 10.1073/pnas.1315852110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

1.  Duplication and extension of the Thorneley and Lowe kinetic model for Klebsiella pneumoniae nitrogenase catalysis using a MATHEMATICA software platform.

Authors:  P E Wilson; A C Nyborg; G D Watt
Journal:  Biophys Chem       Date:  2001-07-24       Impact factor: 2.352

2.  Mechanism of Molybdenum Nitrogenase.

Authors:  Barbara K. Burgess; David J. Lowe
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

3.  Trapping H- bound to the nitrogenase FeMo-cofactor active site during H2 evolution: characterization by ENDOR spectroscopy.

Authors:  Robert Y Igarashi; Mikhail Laryukhin; Patricia C Dos Santos; Hong-In Lee; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2005-05-04       Impact factor: 15.419

4.  Connecting nitrogenase intermediates with the kinetic scheme for N2 reduction by a relaxation protocol and identification of the N2 binding state.

Authors:  Dmitriy Lukoyanov; Brett M Barney; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-24       Impact factor: 11.205

5.  57Fe ENDOR spectroscopy and 'electron inventory' analysis of the nitrogenase E4 intermediate suggest the metal-ion core of FeMo-cofactor cycles through only one redox couple.

Authors:  Peter E Doan; Joshua Telser; Brett M Barney; Robert Y Igarashi; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2011-10-07       Impact factor: 15.419

6.  Hydrogen reactions of nitrogenase. Formation of the molecule HD by nitrogenase and by an inorganic model.

Authors:  E K Jackson; G W Parshall; R W Hardy
Journal:  J Biol Chem       Date:  1968-10-10       Impact factor: 5.157

7.  A nitrogen pressure of 50 atmospheres does not prevent evolution of hydrogen by nitrogenase.

Authors:  F B Simpson; R H Burris
Journal:  Science       Date:  1984-06-08       Impact factor: 47.728

8.  Catalytic and biophysical properties of a nitrogenase Apo-MoFe protein produced by a nifB-deletion mutant of Azotobacter vinelandii.

Authors:  J Christiansen; P J Goodwin; W N Lanzilotta; L C Seefeldt; D R Dean
Journal:  Biochemistry       Date:  1998-09-08       Impact factor: 3.162

9.  Isolation and characterization of an acetylene-resistant nitrogenase.

Authors:  J Christiansen; V L Cash; L C Seefeldt; D R Dean
Journal:  J Biol Chem       Date:  2000-04-14       Impact factor: 5.157

10.  Nitrogenase reactivity: insight into the nitrogen-fixing process through hydrogen-inhibition and HD-forming reactions.

Authors:  B K Burgess; S Wherland; W E Newton; E I Stiefel
Journal:  Biochemistry       Date:  1981-09-01       Impact factor: 3.162

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  25 in total

1.  Reversible Photoinduced Reductive Elimination of H2 from the Nitrogenase Dihydride State, the E(4)(4H) Janus Intermediate.

Authors:  Dmitriy Lukoyanov; Nimesh Khadka; Zhi-Yong Yang; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2016-01-20       Impact factor: 15.419

2.  Catalytic reduction of N2 to NH3 by an Fe-N2 complex featuring a C-atom anchor.

Authors:  Sidney E Creutz; Jonas C Peters
Journal:  J Am Chem Soc       Date:  2014-01-09       Impact factor: 15.419

3.  High-Frequency Fe-H Vibrations in a Bridging Hydride Complex Characterized by NRVS and DFT.

Authors:  Vladimir Pelmenschikov; Leland B Gee; Hongxin Wang; K Cory MacLeod; Sean F McWilliams; Kazimer L Skubi; Stephen P Cramer; Patrick L Holland
Journal:  Angew Chem Int Ed Engl       Date:  2018-06-25       Impact factor: 15.336

4.  Nitrogen isotope fractionation by alternative nitrogenases and past ocean anoxia.

Authors:  Xinning Zhang; Daniel M Sigman; François M M Morel; Anne M L Kraepiel
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-17       Impact factor: 11.205

Review 5.  Reduction of Substrates by Nitrogenases.

Authors:  Lance C Seefeldt; Zhi-Yong Yang; Dmitriy A Lukoyanov; Derek F Harris; Dennis R Dean; Simone Raugei; Brian M Hoffman
Journal:  Chem Rev       Date:  2020-03-16       Impact factor: 60.622

6.  Identification of a key catalytic intermediate demonstrates that nitrogenase is activated by the reversible exchange of N₂ for H₂.

Authors:  Dmitriy Lukoyanov; Zhi-Yong Yang; Nimesh Khadka; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2015-03-05       Impact factor: 15.419

Review 7.  Reactivity, Mechanism, and Assembly of the Alternative Nitrogenases.

Authors:  Andrew J Jasniewski; Chi Chung Lee; Markus W Ribbe; Yilin Hu
Journal:  Chem Rev       Date:  2020-03-04       Impact factor: 60.622

8.  Reductive Elimination of H2 Activates Nitrogenase to Reduce the N≡N Triple Bond: Characterization of the E4(4H) Janus Intermediate in Wild-Type Enzyme.

Authors:  Dmitriy Lukoyanov; Nimesh Khadka; Zhi-Yong Yang; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2016-08-16       Impact factor: 15.419

9.  Mechanism of Nitrogenase H2 Formation by Metal-Hydride Protonation Probed by Mediated Electrocatalysis and H/D Isotope Effects.

Authors:  Nimesh Khadka; Ross D Milton; Sudipta Shaw; Dmitriy Lukoyanov; Dennis R Dean; Shelley D Minteer; Simone Raugei; Brian M Hoffman; Lance C Seefeldt
Journal:  J Am Chem Soc       Date:  2017-09-15       Impact factor: 15.419

10.  CO2 Reduction Catalyzed by Nitrogenase: Pathways to Formate, Carbon Monoxide, and Methane.

Authors:  Nimesh Khadka; Dennis R Dean; Dayle Smith; Brian M Hoffman; Simone Raugei; Lance C Seefeldt
Journal:  Inorg Chem       Date:  2016-08-08       Impact factor: 5.165

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