Literature DB >> 27500789

CO2 Reduction Catalyzed by Nitrogenase: Pathways to Formate, Carbon Monoxide, and Methane.

Nimesh Khadka1, Dennis R Dean2, Dayle Smith3, Brian M Hoffman4, Simone Raugei5, Lance C Seefeldt1.   

Abstract

The reduction of N2 to NH3 by Mo-dependent nitrogenase at its active-site metal cluster FeMo-cofactor utilizes reductive elimination of Fe-bound hydrides with obligatory loss of H2 to activate the enzyme for binding/reduction of N2. Earlier work showed that wild-type nitrogenase and a nitrogenase with amino acid substitutions in the MoFe protein near FeMo-cofactor can catalytically reduce CO2 by two or eight electrons/protons to carbon monoxide (CO) and methane (CH4) at low rates. Here, it is demonstrated that nitrogenase preferentially reduces CO2 by two electrons/protons to formate (HCOO(-)) at rates >10 times higher than rates of CO2 reduction to CO and CH4. Quantum mechanical calculations on the doubly reduced FeMo-cofactor with a Fe-bound hydride and S-bound proton (E2(2H) state) favor a direct reaction of CO2 with the hydride ("direct hydride transfer" reaction pathway), with facile hydride transfer to CO2 yielding formate. In contrast, a significant barrier is observed for reaction of Fe-bound CO2 with the hydride ("associative" reaction pathway), which leads to CO and CH4. Remarkably, in the direct hydride transfer pathway, the Fe-H behaves as a hydridic hydrogen, whereas in the associative pathway it acts as a protic hydrogen. MoFe proteins with amino acid substitutions near FeMo-cofactor (α-70(Val→Ala), α-195(HisGln)) are found to significantly alter the distribution of products between formate and CO/CH4.

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Year:  2016        PMID: 27500789      PMCID: PMC5068488          DOI: 10.1021/acs.inorgchem.6b00388

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  40 in total

1.  Mechanism of Molybdenum Nitrogenase.

Authors:  Barbara K. Burgess; David J. Lowe
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

2.  Interactions among substrates and inhibitors of nitrogenase.

Authors:  J M Rivera-Ortiz; R H Burris
Journal:  J Bacteriol       Date:  1975-08       Impact factor: 3.490

3.  Connecting nitrogenase intermediates with the kinetic scheme for N2 reduction by a relaxation protocol and identification of the N2 binding state.

Authors:  Dmitriy Lukoyanov; Brett M Barney; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-24       Impact factor: 11.205

4.  Misconception of reductive elimination of H2, in the context of the mechanism of nitrogenase.

Authors:  Ian Dance
Journal:  Dalton Trans       Date:  2015-05-21       Impact factor: 4.390

5.  Reduction of CO2 by Pyridine Monoimine Molybdenum Carbonyl Complexes: Cooperative Metal-Ligand Binding of CO2.

Authors:  Daniel Sieh; David C Lacy; Jonas C Peters; Clifford P Kubiak
Journal:  Chemistry       Date:  2015-04-29       Impact factor: 5.236

6.  A Molecular Ruthenium Electrocatalyst for the Reduction of Carbon Dioxide to CO and Formate.

Authors:  Charles W Machan; Matthew D Sampson; Clifford P Kubiak
Journal:  J Am Chem Soc       Date:  2015-06-29       Impact factor: 15.419

7.  Carbon monoxide dehydrogenase from Rhodospirillum rubrum.

Authors:  D Bonam; S A Murrell; P W Ludden
Journal:  J Bacteriol       Date:  1984-08       Impact factor: 3.490

8.  Carbonyl sulfide and carbon dioxide as new substrates, and carbon disulfide as a new inhibitor, of nitrogenase.

Authors:  L C Seefeldt; M E Rasche; S A Ensign
Journal:  Biochemistry       Date:  1995-04-25       Impact factor: 3.162

9.  Isolation of an iron-molybdenum cofactor from nitrogenase.

Authors:  V K Shah; W J Brill
Journal:  Proc Natl Acad Sci U S A       Date:  1977-08       Impact factor: 11.205

10.  Nitrite and hydroxylamine as nitrogenase substrates: mechanistic implications for the pathway of N₂ reduction.

Authors:  Sudipta Shaw; Dmitriy Lukoyanov; Karamatullah Danyal; Dennis R Dean; Brian M Hoffman; Lance C Seefeldt
Journal:  J Am Chem Soc       Date:  2014-08-28       Impact factor: 15.419

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  11 in total

Review 1.  Reduction of Substrates by Nitrogenases.

Authors:  Lance C Seefeldt; Zhi-Yong Yang; Dmitriy A Lukoyanov; Derek F Harris; Dennis R Dean; Simone Raugei; Brian M Hoffman
Journal:  Chem Rev       Date:  2020-03-16       Impact factor: 60.622

2.  Influence of Energy and Electron Availability on In Vivo Methane and Hydrogen Production by a Variant Molybdenum Nitrogenase.

Authors:  Yanning Zheng; Caroline S Harwood
Journal:  Appl Environ Microbiol       Date:  2019-04-18       Impact factor: 4.792

3.  Critical computational analysis illuminates the reductive-elimination mechanism that activates nitrogenase for N2 reduction.

Authors:  Simone Raugei; Lance C Seefeldt; Brian M Hoffman
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-24       Impact factor: 11.205

4.  Mechanism of Nitrogenase H2 Formation by Metal-Hydride Protonation Probed by Mediated Electrocatalysis and H/D Isotope Effects.

Authors:  Nimesh Khadka; Ross D Milton; Sudipta Shaw; Dmitriy Lukoyanov; Dennis R Dean; Shelley D Minteer; Simone Raugei; Brian M Hoffman; Lance C Seefeldt
Journal:  J Am Chem Soc       Date:  2017-09-15       Impact factor: 15.419

5.  Carbon Dioxide Insertion into Bridging Iron Hydrides: Kinetic and Mechanistic Studies.

Authors:  Dae Ho Hong; Leslie J Murray
Journal:  Eur J Inorg Chem       Date:  2019-01-29       Impact factor: 2.524

6.  Access to Metal Centers and Fluxional Hydride Coordination Integral for CO2 Insertion into [Fe3(μ-H)3]3+ Clusters.

Authors:  Dae Ho Hong; Ricardo B Ferreira; Vincent J Catalano; Ricardo García-Serres; Jason Shearer; Leslie J Murray
Journal:  Inorg Chem       Date:  2021-04-26       Impact factor: 5.165

7.  Biofunctionalized conductive polymers enable efficient CO2 electroreduction.

Authors:  Halime Coskun; Abdalaziz Aljabour; Phil De Luna; Dominik Farka; Theresia Greunz; David Stifter; Mahmut Kus; Xueli Zheng; Min Liu; Achim W Hassel; Wolfgang Schöfberger; Edward H Sargent; Niyazi Serdar Sariciftci; Philipp Stadler
Journal:  Sci Adv       Date:  2017-08-04       Impact factor: 14.136

8.  Large Hydrogen Isotope Fractionation Distinguishes Nitrogenase-Derived Methane from Other Methane Sources.

Authors:  Katja E Luxem; William D Leavitt; Xinning Zhang
Journal:  Appl Environ Microbiol       Date:  2020-09-17       Impact factor: 4.792

9.  Identification of Nitrogen Fixation Genes in Lactococcus Isolated from Maize Using Population Genomics and Machine Learning.

Authors:  Shawn M Higdon; Bihua C Huang; Alan B Bennett; Bart C Weimer
Journal:  Microorganisms       Date:  2020-12-20

10.  A Red Fluorescent Protein Reporter System Developed for Measuring Gene Expression in Photosynthetic Bacteria under Anaerobic Conditions.

Authors:  Mingyue Jiang; Yan Zeng; Lingwei Cui; Mengmei Wang; Yanning Zheng
Journal:  Microorganisms       Date:  2022-01-18
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