Literature DB >> 27529724

Reductive Elimination of H2 Activates Nitrogenase to Reduce the N≡N Triple Bond: Characterization of the E4(4H) Janus Intermediate in Wild-Type Enzyme.

Dmitriy Lukoyanov1, Nimesh Khadka2, Zhi-Yong Yang2, Dennis R Dean3, Lance C Seefeldt2, Brian M Hoffman1.   

Abstract

We proposed a reductive elimination/oxidative addition (re/oa) mechanism for reduction of N2 to 2NH3 by nitrogenase, based on identification of a freeze-trapped intermediate of the α-70(Val→Ile) MoFe protein as the Janus intermediate that stores four reducing equivalents on FeMo-co as two [Fe-H-Fe] bridging hydrides (denoted E4(4H)). The mechanism postulates that obligatory re of the hydrides as H2 drives reduction of N2 to a state (denoted E4(2N2H)) with a moiety at the diazene (HNNH) reduction level bound to the catalytic FeMo-co. EPR/ENDOR/photophysical measurements on wild type (WT) MoFe protein now establish this mechanism. They show that a state freeze-trapped during N2 reduction by WT MoFe is the same Janus intermediate, thereby establishing the α-70(Val→Ile) intermediate as a reliable guide to mechanism. Monitoring the Janus state in WT MoFe during N2 reduction under mixed-isotope condition, H2O buffer/D2, and the converse, establishes that the bridging hydrides/deuterides do not exchange with solvent during enzymatic turnover, thereby solving longstanding puzzles. Relaxation of E4(2N2H) to the WT resting-state is shown to occur via oa of H2 and release of N2 to form Janus, followed by sequential release of two H2, demonstrating the kinetic reversibility of the re/oa equilibrium. Relative populations of E4(2N2H)/E4(4H) freeze-trapped during WT turnover furthermore show that the reversible re/oa equilibrium between [E4(4H) + N2] and [E4(2N2H) + H2] is ∼ thermoneutral (ΔreG(0) ∼ -2 kcal/mol), whereas, by itself, hydrogenation of N2(g) is highly endergonic. These findings demonstrate that (i) re/oa accounts for the historical Key Constraints on mechanism, (ii) that Janus is central to N2 reduction by WT enzyme, which (iii) indeed occurs via the re/oa mechanism. Thus, emerges a picture of the central mechanistic steps by which nitrogenase carries out one of the most challenging chemical transformations in biology.

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Year:  2016        PMID: 27529724      PMCID: PMC5024552          DOI: 10.1021/jacs.6b06362

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  19 in total

1.  Duplication and extension of the Thorneley and Lowe kinetic model for Klebsiella pneumoniae nitrogenase catalysis using a MATHEMATICA software platform.

Authors:  P E Wilson; A C Nyborg; G D Watt
Journal:  Biophys Chem       Date:  2001-07-24       Impact factor: 2.352

2.  Mechanism of Molybdenum Nitrogenase.

Authors:  Barbara K. Burgess; David J. Lowe
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

3.  Reversible Photoinduced Reductive Elimination of H2 from the Nitrogenase Dihydride State, the E(4)(4H) Janus Intermediate.

Authors:  Dmitriy Lukoyanov; Nimesh Khadka; Zhi-Yong Yang; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2016-01-20       Impact factor: 15.419

4.  Trapping H- bound to the nitrogenase FeMo-cofactor active site during H2 evolution: characterization by ENDOR spectroscopy.

Authors:  Robert Y Igarashi; Mikhail Laryukhin; Patricia C Dos Santos; Hong-In Lee; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2005-05-04       Impact factor: 15.419

5.  Connecting nitrogenase intermediates with the kinetic scheme for N2 reduction by a relaxation protocol and identification of the N2 binding state.

Authors:  Dmitriy Lukoyanov; Brett M Barney; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-24       Impact factor: 11.205

6.  Identification of a key catalytic intermediate demonstrates that nitrogenase is activated by the reversible exchange of N₂ for H₂.

Authors:  Dmitriy Lukoyanov; Zhi-Yong Yang; Nimesh Khadka; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2015-03-05       Impact factor: 15.419

7.  A nitrogen pressure of 50 atmospheres does not prevent evolution of hydrogen by nitrogenase.

Authors:  F B Simpson; R H Burris
Journal:  Science       Date:  1984-06-08       Impact factor: 47.728

8.  Catalytic and biophysical properties of a nitrogenase Apo-MoFe protein produced by a nifB-deletion mutant of Azotobacter vinelandii.

Authors:  J Christiansen; P J Goodwin; W N Lanzilotta; L C Seefeldt; D R Dean
Journal:  Biochemistry       Date:  1998-09-08       Impact factor: 3.162

9.  Binding affinity of alkynes and alkenes to low-coordinate iron.

Authors:  Ying Yu; Jeremy M Smith; Christine J Flaschenriem; Patrick L Holland
Journal:  Inorg Chem       Date:  2006-07-24       Impact factor: 5.165

10.  A confirmation of the quench-cryoannealing relaxation protocol for identifying reduction states of freeze-trapped nitrogenase intermediates.

Authors:  Dmitriy Lukoyanov; Zhi-Yong Yang; Simon Duval; Karamatullah Danyal; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  Inorg Chem       Date:  2014-03-18       Impact factor: 5.165

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  31 in total

Review 1.  Catalytic N2-to-NH3 (or -N2H4) Conversion by Well-Defined Molecular Coordination Complexes.

Authors:  Matthew J Chalkley; Marcus W Drover; Jonas C Peters
Journal:  Chem Rev       Date:  2020-04-30       Impact factor: 60.622

2.  N-H Bond Dissociation Enthalpies and Facile H Atom Transfers for Early Intermediates of Fe-N2 and Fe-CN Reductions.

Authors:  Jonathan Rittle; Jonas C Peters
Journal:  J Am Chem Soc       Date:  2017-02-17       Impact factor: 15.419

3.  Interplay of hemilability and redox activity in models of hydrogenase active sites.

Authors:  Shengda Ding; Pokhraj Ghosh; Marcetta Y Darensbourg; Michael B Hall
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-30       Impact factor: 11.205

4.  Light Enhanced Fe-Mediated Nitrogen Fixation: Mechanistic Insights Regarding H2 Elimination, HER, and NH3 Generation.

Authors:  Dirk J Schild; Jonas C Peters
Journal:  ACS Catal       Date:  2019-03-26       Impact factor: 13.084

5.  High-Frequency Fe-H Vibrations in a Bridging Hydride Complex Characterized by NRVS and DFT.

Authors:  Vladimir Pelmenschikov; Leland B Gee; Hongxin Wang; K Cory MacLeod; Sean F McWilliams; Kazimer L Skubi; Stephen P Cramer; Patrick L Holland
Journal:  Angew Chem Int Ed Engl       Date:  2018-06-25       Impact factor: 15.336

Review 6.  Reduction of Substrates by Nitrogenases.

Authors:  Lance C Seefeldt; Zhi-Yong Yang; Dmitriy A Lukoyanov; Derek F Harris; Dennis R Dean; Simone Raugei; Brian M Hoffman
Journal:  Chem Rev       Date:  2020-03-16       Impact factor: 60.622

7.  Interplay between Terminal and Bridging Diiron Hydrides in Neutral and Oxidized States.

Authors:  Xin Yu; Chen-Ho Tung; Wenguang Wang; Mioy T Huynh; Danielle L Gray; Sharon Hammes-Schiffer; Thomas B Rauchfuss
Journal:  Organometallics       Date:  2017-05-18       Impact factor: 3.876

8.  N2 -to-NH3 Conversion by a triphos-Iron Catalyst and Enhanced Turnover under Photolysis.

Authors:  Trixia M Buscagan; Paul H Oyala; Jonas C Peters
Journal:  Angew Chem Int Ed Engl       Date:  2017-05-10       Impact factor: 15.336

9.  Critical computational analysis illuminates the reductive-elimination mechanism that activates nitrogenase for N2 reduction.

Authors:  Simone Raugei; Lance C Seefeldt; Brian M Hoffman
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-24       Impact factor: 11.205

10.  Mechanism of Nitrogenase H2 Formation by Metal-Hydride Protonation Probed by Mediated Electrocatalysis and H/D Isotope Effects.

Authors:  Nimesh Khadka; Ross D Milton; Sudipta Shaw; Dmitriy Lukoyanov; Dennis R Dean; Shelley D Minteer; Simone Raugei; Brian M Hoffman; Lance C Seefeldt
Journal:  J Am Chem Soc       Date:  2017-09-15       Impact factor: 15.419

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